Gene Haur_2478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_2478 
Symbol 
ID5734359 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand+ 
Start bp3169087 
End bp3170112 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content54% 
IMG OID641279618 
ProductCRISPR-associated RAMP Csm4 family protein 
Protein accessionYP_001545244 
Protein GI159898997 
COG category[L] Replication, recombination and repair 
COG ID[COG1567] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID[TIGR01903] CRISPR-associated RAMP protein, Csm4 family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATTTA ATCTGATTCG GCTCAAGCCA CAAGCTGCGT TTCACTTTGG CATGCAAGGC 
ATCGATATGG AAGTGGTCAG CGAAACCTGC CCATCCGACA CGCTCTACGC CGCTTTATTT 
TGGCAGGCAT TGCAACAAGG CCAGCGCTGG GCCAGCGAGC CGAGCAATCC GCCATTCACA 
ATCTCGTCGT GTTTTCCGTA TGTTGATGGA ATTCAACTAT TGCCTGTGCC AATGCTGCCA 
CCCTTGCCCA GCGATAAGCA AAACCCGGGC GAGCGCAAGC AATTCAAAAA AGTGCGGTTT 
GTTTCCAGCG AGATTTTTAT TAATCTACTG GCCGGAACCC ACTCGCTGAG CCATTATTTT 
CGGCCAACCA ACGGCGTTGC TTTGCAAAAT GGCAGTGTCT TGGTCAGCCA AGCTGAATTT 
AGCGCCAACA AATGGGCTGT GGCAGATCCG CTTTGGAAAA TCGAGTCGAT TCCGCATGTG 
GCAGTTGATC GTTGGAGCAA TGCTTCGGCC TATTACGAAA CTGGCCAAGT GCGCTTTGCC 
GAAGGTTGTG GCTTAGCAAT CTTGGCACTT GGCGATATCA AACAACTGAT GTCGCTCTTG 
CACCAAGTTG GCATCGATGG CTTAGGCGGG CGGCGCAGCA AGGGGGTTGG GATGTTTGAG 
CCAGAGCTGC AAACCGAAAC TCTCGATTTA CCAGCTGCTA CCAGCGATTC GGTAATTGTG 
CTCTCGCGCT ATTTGCCGAG TGCCGCTGAG CTTGCGGCAG GAGTGCTCGA TCTGCCAGCA 
GCCTATAGTT TAGAGGATGT GACTGGCTGG ATGTATTCGC CCGCTGCCAA AGCCCAACGC 
CGCAAGGCAA TTTGGATGAT CGGGGTTGGC TCGCGCTTAA ATCGCACAGG GTTGGCTCAT 
TCGATCATCG GCTCAAGCGT TGATGTGGCC CCAACCTACG ACACCCCCAA CGCTGGCGTG 
AATCACCCCG TTTGGCGACA TGGGCTAGCG CTCACGGTCG GTTGTAGCGT AGGAGATTCG 
CAATGA
 
Protein sequence
MEFNLIRLKP QAAFHFGMQG IDMEVVSETC PSDTLYAALF WQALQQGQRW ASEPSNPPFT 
ISSCFPYVDG IQLLPVPMLP PLPSDKQNPG ERKQFKKVRF VSSEIFINLL AGTHSLSHYF 
RPTNGVALQN GSVLVSQAEF SANKWAVADP LWKIESIPHV AVDRWSNASA YYETGQVRFA 
EGCGLAILAL GDIKQLMSLL HQVGIDGLGG RRSKGVGMFE PELQTETLDL PAATSDSVIV 
LSRYLPSAAE LAAGVLDLPA AYSLEDVTGW MYSPAAKAQR RKAIWMIGVG SRLNRTGLAH 
SIIGSSVDVA PTYDTPNAGV NHPVWRHGLA LTVGCSVGDS Q