| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1980 |
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| Symbol | |
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| ID | 5539458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 2535861 |
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| End bp | 2537003 |
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| Gene Length | 1143 bp |
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| Protein Length | 380 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640894115 |
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| Product | CRISPR-associated RAMP Csm4 family protein |
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| Protein accession | YP_001432086 |
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| Protein GI | 156741957 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1567] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
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| TIGRFAM ID | [TIGR01903] CRISPR-associated RAMP protein, Csm4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.390104 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.234519 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGATC TGACTGTCTA CGCTCTGGTT CCGCCGCCGG ATCGACGGAC ACTCTGTTTT
CACTTTGGTC GTCAGGGGAT TGGTCTGGAG GAAACCGGCG AAACCTTTCC GTCCGACTCG
TTGTTTGCCG CGCTGGTGGC GCAGGCAGCG ACGCTCGACA ACGCCGATCT CGATGCGGAG
GGTATTCCGG CGTTTGCGCG CCCTTTTCGC AATGGCAATC CGCCGTTGTT CCACAGTTCG
CTCTTTCCGC GCCTCGGCGA TCTGCCGCTG CTGCCGCGCC CGGCGTTGCC CCTCGTGACG
CCGGACGACG ACATACGTAT GCGGATCGGC AAGCGGTTCA AGCGCCTGAA GTATCTGTCG
CCTGCGCTGT TCGCCGATGT GTGCGCCGGT CGCCCGATTG CCGACGCGCC GCTTATGCTC
CAGGACGGGA AGGTCTGGAT AACAGCAGCG GAAGCGCGGA CGCTGACCGT CGATCCCTGG
CGACGCCAGG CGAACGAGAG CGACGAGGCG TGGAAGCGGC GGCTGGAAAC GACGCCAATC
TGGTCGATTG TCAGCGAGCC GTACGTGACC GTTGATCGGG TCAGTTGCGC CTCGGCGTAC
TATGAGGTCG GGCGGGTGAC TTTTGCGCCG GGCGCGGGTC TGGCGCTGTT GGTGCGCTTT
GTCGATCCGG CGTGGCGCTT GCGCTTTGAA CAGTTGCTCG ACCTGCTGGG GCACAGTGGG
CTTGGTGGTC GGCGCGCCAG CAGCGGCGCA TTCGACTGGC AGCCTGGCAA GGCACTGGAT
GTCACATGGG GCGCGGCAGG GGGACGCGCG GTGCTCCTCT CGCGCTATCT TCCGGCGCAG
CACGAGATTG CTGCCTTGCG CAGTGATCGC GCAGCGTATC AACTGGTCAA CATCGGTGGA
TGGTTGTTCA GCCCAGGACA CCTGCCGCAA CGCCGGCAAC GGGTGCGCAT GGTCGCCGAG
GGGTCAGTGC TCGATGTGCG CGCCGCCAAT CCGCGCGGTC AGGTGGTTGA TGTGCGCCCT
GATTATCGCA AAAGCAAAAA CCCGCATCCC GCGCTCGGCA AGAATGTCGG CACGCCGCAC
CCCGTCTACC GTAGCGGACT GGCGCTGACG GCGCCGATCC CCGATTGGAA GGAGGAGTCC
TGA
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| Protein sequence | MNDLTVYALV PPPDRRTLCF HFGRQGIGLE ETGETFPSDS LFAALVAQAA TLDNADLDAE
GIPAFARPFR NGNPPLFHSS LFPRLGDLPL LPRPALPLVT PDDDIRMRIG KRFKRLKYLS
PALFADVCAG RPIADAPLML QDGKVWITAA EARTLTVDPW RRQANESDEA WKRRLETTPI
WSIVSEPYVT VDRVSCASAY YEVGRVTFAP GAGLALLVRF VDPAWRLRFE QLLDLLGHSG
LGGRRASSGA FDWQPGKALD VTWGAAGGRA VLLSRYLPAQ HEIAALRSDR AAYQLVNIGG
WLFSPGHLPQ RRQRVRMVAE GSVLDVRAAN PRGQVVDVRP DYRKSKNPHP ALGKNVGTPH
PVYRSGLALT APIPDWKEES
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