Gene Ppha_2451 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_2451 
Symbol 
ID6461345 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand- 
Start bp2535282 
End bp2536346 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content35% 
IMG OID642728631 
ProductCRISPR-associated RAMP protein, Csm4 family 
Protein accessionYP_002019253 
Protein GI194337459 
COG category[L] Replication, recombination and repair 
COG ID[COG1567] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID[TIGR01903] CRISPR-associated RAMP protein, Csm4 family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATATC TTGTCGAACT GCAATTTGAC CACGCTGTTC ATTTTGGGTC ATCCATTGCC 
GGTTTTGGTA TTGAAGATGT AGATGAAACG TGTCACTCAG ATACTCTCTT TAGTGGTATA 
ATTAACCAGC TTGCTGCGAT TGAACACTTA ATATCTGATT TTAGCCTCAA AAATTTTCTT 
CAGGAATTTA ATTCACCAAC GCCGCCATTT CGAATTTCAT CATTCGGAGT TGTAAAAGGT 
GTGGATTATT TTCTCCCAAA ACCTTTAATA GAACCTGATT TTTTTGCTTG TGATTCAAGT 
GTAAATAAGT ATAAAAAAGA CTTTAAAAAA CTTAAATGGG TTCATTTAGA GGATTTTCAT 
AAATGGCAGA AAAAATCCCT TAGCAGTGAT GATATCAAAG GTTATTTCGT TAGTTACGAT 
AATGAACCTC CTCCAAAATC GCCGCCCTTT TCAAAAATAC ATACAAAAGT GCAACATATA 
CAAGACCGTG AAACAGATGC TACCCAAATA TACCATACTG GGCAATTGTT TTATGGTGAA 
AGAGTTTATC CGTTTTTTTT TGTAGACTTT AACTCGAAAT CTCTCTCATG GGAATGGTTT 
GTTGAGGCGC TGAGGCTTAT AGGAATCTCA GGCTTGGGCG GGCGACGTTC AACTGGTTAT 
GGTAAATTCT GCTTACGATA CGAACCAATA CTGATTGGTG GGGATGAGTC TGCATGGCCT 
AAAAAAGTTT GTGAAAGTAA TCAGCATACC AAAGCTATTA CTTTATGGAG CAACGTGCTA 
AATCATCAAA GTGAAGGTCA ATATTTATTT TCTTTGCTTG CACCTAAAGC GTTAAGTGAA 
AATGATTGTT TCGTATATAA TTTAATAATT CGTAAAGGAT GGTTTTTTTC TAATTCAAGT 
TTTTGCCAGA TGAAGCGAAA AACAGTTTAC ATGTTTTCGG AAGGTTCAAT ATTTTACAGA 
AATGTTGAAG GTGGATTGAT CAATATCTCA CCTGATGAAC TTCCCGAAAA TCATCATGAT 
ATTTATCGAT ATGGACTTCC TTTTACAATA CCATTTTCTA TTTAA
 
Protein sequence
MKYLVELQFD HAVHFGSSIA GFGIEDVDET CHSDTLFSGI INQLAAIEHL ISDFSLKNFL 
QEFNSPTPPF RISSFGVVKG VDYFLPKPLI EPDFFACDSS VNKYKKDFKK LKWVHLEDFH 
KWQKKSLSSD DIKGYFVSYD NEPPPKSPPF SKIHTKVQHI QDRETDATQI YHTGQLFYGE 
RVYPFFFVDF NSKSLSWEWF VEALRLIGIS GLGGRRSTGY GKFCLRYEPI LIGGDESAWP 
KKVCESNQHT KAITLWSNVL NHQSEGQYLF SLLAPKALSE NDCFVYNLII RKGWFFSNSS 
FCQMKRKTVY MFSEGSIFYR NVEGGLINIS PDELPENHHD IYRYGLPFTI PFSI