15 homologs were found in PanDaTox collection
for query gene Rpal_1319 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_1319  branched-chain amino acid transport  100 
 
 
105 aa  195  1.0000000000000001e-49  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1825  branched chain amino acid ABC transporter  84.76 
 
 
105 aa  172  1.9999999999999998e-42  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0791609  normal  0.220841 
 
 
-
 
NC_007958  RPD_4139  branched-chain amino acid transport  81.9 
 
 
105 aa  167  5e-41  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4738  branched-chain amino acid transport  79.05 
 
 
105 aa  144  4.0000000000000006e-34  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1764  branched-chain amino acid transport  43.75 
 
 
101 aa  60.1  0.00000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.240182  normal  0.0440928 
 
 
-
 
NC_013743  Htur_0696  branched-chain amino acid transport  35.92 
 
 
104 aa  59.7  0.00000001  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008825  Mpe_A2037  putative transmembrane protein  40.74 
 
 
102 aa  56.2  0.0000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.485206  normal 
 
 
-
 
NC_010511  M446_2156  branched-chain amino acid transport  46.81 
 
 
106 aa  53.5  0.000001  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.716667 
 
 
-
 
NC_013201  Hmuk_3354  branched-chain amino acid transport  32.47 
 
 
103 aa  52.8  0.000002  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.0254593  normal 
 
 
-
 
NC_011894  Mnod_1118  branched-chain amino acid transport  48.24 
 
 
106 aa  51.6  0.000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0609203  n/a   
 
 
-
 
NC_009636  Smed_0733  branched-chain amino acid transport  34.69 
 
 
100 aa  50.1  0.00001  Sinorhizobium medicae WSM419  Bacteria  normal  0.257385  normal  0.712483 
 
 
-
 
NC_008740  Maqu_2876  branched-chain amino acid transport  40.35 
 
 
103 aa  48.9  0.00003  Marinobacter aquaeolei VT8  Bacteria  normal  0.0584958  n/a   
 
 
-
 
NC_013922  Nmag_2666  branched-chain amino acid transport  36.36 
 
 
105 aa  48.9  0.00003  Natrialba magadii ATCC 43099  Archaea  normal  0.404817  n/a   
 
 
-
 
NC_007519  Dde_3177  hypothetical protein  40 
 
 
99 aa  45.1  0.0003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1995  branched-chain amino acid transport  34.57 
 
 
101 aa  41.2  0.005  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
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