49 homologs were found in PanDaTox collection
for query gene PputGB1_2636 on replicon NC_010322
Organism: Pseudomonas putida GB-1



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_3259  acyl-CoA dehydrogenase-related protein  91.35 
 
 
347 aa  640    Pseudomonas putida KT2440  Bacteria  normal  0.543921  normal 
 
 
-
 
NC_010322  PputGB1_2636  acyl-CoA dehydrogenase  100 
 
 
347 aa  695    Pseudomonas putida GB-1  Bacteria  normal  0.292935  normal  0.528602 
 
 
-
 
NC_009512  Pput_2502  hypothetical protein  91.35 
 
 
347 aa  639    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2652  acyl-CoA dehydrogenase  81.56 
 
 
347 aa  556  1e-157  Pseudomonas putida W619  Bacteria  normal  0.530272  normal  0.685897 
 
 
-
 
NC_007492  Pfl01_2543  hypothetical protein  56.33 
 
 
332 aa  330  2e-89  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.730703 
 
 
-
 
NC_004578  PSPTO_3131  hypothetical protein  57.24 
 
 
337 aa  328  7e-89  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.470644  n/a   
 
 
-
 
NC_007005  Psyr_2998  hypothetical protein  53.09 
 
 
337 aa  316  4e-85  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5416  putative acyl-CoA dehydrogenase-related protein  56.07 
 
 
388 aa  301  1e-80  Burkholderia phymatum STM815  Bacteria  normal  normal  0.699876 
 
 
-
 
NC_010681  Bphyt_2240  putative acyl-CoA dehydrogenase-related protein  55 
 
 
392 aa  291  1e-77  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2027  putative acyl-CoA dehydrogenase-related protein  54.7 
 
 
335 aa  288  8e-77  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5871  putative acyl-CoA dehydrogenase-related protein  49.68 
 
 
363 aa  274  1.0000000000000001e-72  Delftia acidovorans SPH-1  Bacteria  normal  0.845489  normal  0.406047 
 
 
-
 
NC_007348  Reut_B4937  acyl-CoA dehydrogenase-related protein  49.19 
 
 
334 aa  273  3e-72  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1801  putative acyl-CoA dehydrogenase-related protein  40.79 
 
 
362 aa  247  2e-64  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.162926 
 
 
-
 
NC_013093  Amir_2567  putative acyl-CoA dehydrogenase-related protein  41.78 
 
 
359 aa  186  6e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752192  n/a   
 
 
-
 
NC_013441  Gbro_0202  hypothetical protein  42.32 
 
 
333 aa  180  4e-44  Gordonia bronchialis DSM 43247  Bacteria  normal  0.499323  n/a   
 
 
-
 
NC_013521  Sked_20110  hypothetical protein  38.24 
 
 
382 aa  173  5e-42  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.252423  normal  0.481515 
 
 
-
 
NC_014151  Cfla_0512  hypothetical protein  39.67 
 
 
338 aa  171  2e-41  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0189199  decreased coverage  0.000000311595 
 
 
-
 
NC_009338  Mflv_0021  dehydrogenase  44.26 
 
 
313 aa  163  3e-39  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0755375  normal 
 
 
-
 
NC_008541  Arth_0335  hypothetical protein  36.54 
 
 
341 aa  157  2e-37  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3272  putative acyl-CoA dehydrogenase-related protein  40.47 
 
 
396 aa  152  1e-35  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.00000123433  hitchhiker  0.0000576183 
 
 
-
 
NC_011886  Achl_0555  hypothetical protein  36.27 
 
 
350 aa  149  5e-35  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012803  Mlut_01080  hypothetical protein  37.03 
 
 
372 aa  141  9.999999999999999e-33  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3329  acyl-CoA dehydrogenase type 2  31.96 
 
 
382 aa  97.8  3e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.684525  normal 
 
 
-
 
NC_010725  Mpop_0138  cyclic nucleotide-binding protein  30.77 
 
 
382 aa  94  3e-18  Methylobacterium populi BJ001  Bacteria  normal  0.363055  normal  0.0562136 
 
 
-
 
NC_007958  RPD_0575  Acyl-CoA dehydrogenase  29.64 
 
 
322 aa  89  1e-16  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0796  Acyl-CoA dehydrogenase-like protein  29.17 
 
 
381 aa  87.8  2e-16  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.585612  normal  0.628725 
 
 
-
 
NC_011666  Msil_3593  acyl-CoA dehydrogenase domain protein  29.28 
 
 
385 aa  85.5  0.000000000000001  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_4098  acyl-CoA dehydrogenase  30.11 
 
 
373 aa  85.9  0.000000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.461592  normal  0.148654 
 
 
-
 
NC_010172  Mext_3848  acyl-CoA dehydrogenase type 2  30.93 
 
 
391 aa  84.7  0.000000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.680066 
 
 
-
 
NC_011757  Mchl_4157  Acyl-CoA dehydrogenase type 2 domain  30.82 
 
 
391 aa  80.9  0.00000000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0737881  normal 
 
 
-
 
NC_010725  Mpop_4305  Acyl-CoA dehydrogenase type 2 domain  30.61 
 
 
412 aa  80.5  0.00000000000003  Methylobacterium populi BJ001  Bacteria  normal  0.0499711  normal 
 
 
-
 
NC_013730  Slin_2922  Acyl-CoA dehydrogenase type 2 domain protein  24.54 
 
 
391 aa  79  0.0000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3342  acyl-CoA dehydrogenase type 2  31.03 
 
 
410 aa  55.8  0.000001  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_1346  hypothetical protein  25.08 
 
 
364 aa  55.1  0.000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0806475  n/a   
 
 
-
 
NC_009511  Swit_1842  acyl-CoA dehydrogenase domain-containing protein  24.44 
 
 
387 aa  51.6  0.00002  Sphingomonas wittichii RW1  Bacteria  normal  0.982054  normal 
 
 
-
 
NC_012560  Avin_31490  Acyl-CoA dehydrogenase family protein  27.84 
 
 
402 aa  51.6  0.00002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2362  acyl-CoA dehydrogenase type 2  28.47 
 
 
399 aa  48.9  0.0001  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00266653  hitchhiker  0.00112869 
 
 
-
 
NC_011981  Avi_7189  acyl-CoA dehydrogenase  27.27 
 
 
412 aa  48.5  0.0002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4989  acyl-CoA dehydrogenase type 2  27.27 
 
 
393 aa  46.6  0.0006  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2915  hypothetical protein  29.79 
 
 
405 aa  46.6  0.0006  Pseudomonas aeruginosa PA7  Bacteria  normal  0.281087  n/a   
 
 
-
 
NC_010581  Bind_2054  acyl-CoA dehydrogenase type 2  28.28 
 
 
415 aa  45.8  0.001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.876427  normal 
 
 
-
 
NC_010581  Bind_2053  acyl-CoA dehydrogenase type 2  27.81 
 
 
403 aa  45.4  0.001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2985  acyl-CoA dehydrogenase family protein  24.22 
 
 
426 aa  45.1  0.002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.280885  n/a   
 
 
-
 
NC_002976  SERP1866  acyl-CoA dehydrogenase-related protein  25.68 
 
 
381 aa  45.1  0.002  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5156  acyl-CoA dehydrogenase  24.88 
 
 
420 aa  45.1  0.002  Agrobacterium vitis S4  Bacteria  normal  0.0718281  n/a   
 
 
-
 
NC_009512  Pput_0238  acyl-CoA dehydrogenase type 2  26.76 
 
 
393 aa  43.5  0.006  Pseudomonas putida F1  Bacteria  normal  0.679999  normal  0.247147 
 
 
-
 
NC_002947  PP_0223  DszC family monooxygenase  26.95 
 
 
406 aa  43.5  0.006  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.00885592  hitchhiker  0.00679283 
 
 
-
 
NC_010322  PputGB1_0247  acyl-CoA dehydrogenase type 2  26.24 
 
 
393 aa  43.1  0.007  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7712  Acyl-CoA dehydrogenase, central region  28.98 
 
 
425 aa  42.7  0.009  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>