13 homologs were found in PanDaTox collection
for query gene Lcho_4125 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_4125  NHL repeat-containing protein  100 
 
 
339 aa  652    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.622365 
 
 
-
 
NC_002939  GSU1788  NHL repeat-containing protein  25.86 
 
 
354 aa  48.9  0.0001  Geobacter sulfurreducens PCA  Bacteria  normal  0.565326  n/a   
 
 
-
 
NC_009483  Gura_1997  NHL repeat-containing protein  27.23 
 
 
303 aa  46.6  0.0005  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000426581  n/a   
 
 
-
 
NC_012918  GM21_3162  NHL repeat containing protein  23.14 
 
 
395 aa  46.2  0.0008  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU3225  NHL repeat-containing protein  23.97 
 
 
365 aa  46.2  0.001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1838  NHL repeat-containing protein  28.04 
 
 
296 aa  45.8  0.001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_1273  NHL repeat containing protein  27.61 
 
 
387 aa  45.8  0.001  Methanosphaerula palustris E1-9c  Archaea  normal  0.349999  normal  0.851657 
 
 
-
 
NC_002939  GSU2914  NHL repeat-containing protein  31.03 
 
 
898 aa  44.7  0.002  Geobacter sulfurreducens PCA  Bacteria  normal  0.0718376  n/a   
 
 
-
 
NC_011832  Mpal_2630  PKD domain containing protein  22.02 
 
 
930 aa  43.9  0.004  Methanosphaerula palustris E1-9c  Archaea  normal  0.668358  decreased coverage  0.0001414 
 
 
-
 
NC_007355  Mbar_A3620  putative surface layer protein  24.64 
 
 
752 aa  43.1  0.006  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_007517  Gmet_1869  NHL repeat-containing protein  24.89 
 
 
353 aa  43.1  0.006  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0563587 
 
 
-
 
NC_014212  Mesil_1383  serine/threonine protein kinase  30.97 
 
 
678 aa  43.5  0.006  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0132851 
 
 
-
 
NC_009483  Gura_0923  NHL repeat-containing protein  22.71 
 
 
379 aa  42.7  0.009  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
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