Gene Mbar_A3620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A3620 
Symbol 
ID3626322 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp4651788 
End bp4654046 
Gene Length2259 bp 
Protein Length752 aa 
Translation table11 
GC content37% 
IMG OID637702450 
Productputative surface layer protein 
Protein accessionYP_307065 
Protein GI73671050 
COG category[R] General function prediction only 
COG ID[COG3291] FOG: PKD repeat 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTTAA ATGAATATAA ATTATTAACA TTTTTTAATA TGAAATATAA ACGAAAGTCA 
AAGGAGGAAT TTTTAATAAA GTATCAACAC GATAACACAT TTAGGATAAT GTCACTATGT
TTGATTATCC TCTTTCTTGG AGTAATGAGT GCATCAGTTG CGCACGCTGA AAGTTATAAG
TTTGTTACTA AATGGGGTTC TTATGGCAAT GGAGCTGGAC AATTCCATTA TCCACGTGCT
ATTGTTGCAA CTTCATCTGG ATATATTTAT GTTGCCGATT CCGGAAACAA TCGAGTTCAG
GAATTTAATA GCAATGGTAA ATTCATTAAC CAGTGGAGCT CTACTAATGA TGTATCACTG
GGTTCTGTAA ATGGTGTTGC TATAGATTCT TCAGGTGATG TTTATGTTGC TGATACTAAC
AATCGCATTG TGAAGTTTGA CAAAAATGGT AATTTCATTA CAAAATTTGG TTCTTATGGA
AGTGGCAATG TACAGTTTAA AAATGCTCGC GATATTTGTT TAGATTCATC TGGCAATATT
TATGTTGCCG ATACGGGCAA TAATCGAATT CAGAAGCTTG ATAACAATGG AAATTATTTG
GTGCAATGGG GCTCTTATGG CAGCAGTAAT GGACAATTCA AGAATCCTAT TGATGTTGCC
TTAGATTCTT TGGATAACGT TTATGTTGCT GACAAAGATA ATCATTGCAT TAAAAAGTTT
GATAGTAACG GCAATTATCT AATGCAATTC GGTAATTCTG GCAATGGTGA TGGACAGTTT
AATAACATTA TAAGTGTTTT TGTTGACTCT TCTGGCAATA TTTATGTTTC TGACAGAGGA
AATACTCGCA TTCAGAAGTT TGACAGTGAC GGCAATTATC TAACACACTG GGGTTCTTAT
GGAACAAATG ATGGGCAATT CAAAAATCCT GAAGATATTG GTGTAGATTC TTCAGGCAAT
GTTTATGTTG CTGATGCTGA CAACAATCGC ATTCAGAAGT TTGCTCCAGT ATATCCACCA
GTAACTAATT TTGTCAGCAA TGTTACCACA GGCTATGCTC CCCTGGCAGT AAAGTTTACT
GACACAAGTA CAGGAACACC ATTTTCCTGG ACATGGAACT TTGGAGATGG GACTTTTTCA
ACGGTAAAGA ATCCGACACA TACATATTCC AAAGCAGGAA AATACACCGT AAAACTTACT
GCAACAAATG AAGGGGGCAA CAGTACTGCA GCAAAAACAA ATTATATAAC TGTCAAAACG
ACTACTGTAA AACCTGTTGC TATATTTTCC GCATCTCCAA CCTCTGGAAA AGCACCGTTA
AAAGTTACTT TTACTGACAA AAGTACAGGG TCACCGACTA AATGGAAATG GAATTTTGGA
GACGGGTCAA AGTCATTCCT CCAAAATCCA AGTCATAAGT ATTCAAAAGC AGGAAAATAT
ACCGTTAGCT TAACTGTAAA GAATGATAAG GGCAGTAATA CGGTAACAAA AACAAACTAT
CTAACAGTAG TAGCAAAACC TGTTGCTGCA TTTTCTGCCT CTCCAACCTC CGGAAAAGCA
CCGTTAAAAG TTACTTTTAC TGACAAAAGC ACAGGGTCAC CGACTAAATG GAAATGGAAT
TTTGGAGACG GAACAACTTC AGCAAAACAG AATCCAATTC ATAAGTATTC AAAGGCAGGA
AAGTATAAAG TGACACTTAC AGTTGCCAAC GCAGCGGGTA TTAATACGGT AACAAAAACA
AACTATATAA CAGTAATAGC AAAGCCAGCT GCTGCATTTT CTGCCTCCCC AACCTCCGGA
AAAGCACCAT TAAAAGTTAC CTTTAGTGAC AAAAGTACAG GAACACCAAC GAAATGGAAA
TGGACCTTTG GAGATGGATC AAAGTCATTC CTCCAAAATC CGACTCATAA GTATTCAAAG
GCAGGAAAGT ATAAAGTGAT ACTTACGGTT ACCAACACAG CAGGTAGTAA TACGGTAACA
AAAACAAATT ATATAACAGT AGTAGCAAAA CCTGTTGCTG CATTTTCCGC TTCTCCAACT
TCCGGAAAAG CACCATTAAA AGTTACCTTT TCTGACAAAA GTACAGGAAC GCCGACTAAA
TGGAAATGGA ATTTTGGAGA TGGAGCTACT TCAATCAAGC AGAATCCAGT CCATAAGTAT
TCCAATGTAG GTAGTTATAC TGTTAAGTTG ACAGTAACGA ATGCTGCTGG AAGTAACACT
AAAACTATTT CTAATTATAT TATATTGAAA AGTAAGTAA
 
Protein sequence
MNLNEYKLLT FFNMKYKRKS KEEFLIKYQH DNTFRIMSLC LIILFLGVMS ASVAHAESYK 
FVTKWGSYGN GAGQFHYPRA IVATSSGYIY VADSGNNRVQ EFNSNGKFIN QWSSTNDVSL
GSVNGVAIDS SGDVYVADTN NRIVKFDKNG NFITKFGSYG SGNVQFKNAR DICLDSSGNI
YVADTGNNRI QKLDNNGNYL VQWGSYGSSN GQFKNPIDVA LDSLDNVYVA DKDNHCIKKF
DSNGNYLMQF GNSGNGDGQF NNIISVFVDS SGNIYVSDRG NTRIQKFDSD GNYLTHWGSY
GTNDGQFKNP EDIGVDSSGN VYVADADNNR IQKFAPVYPP VTNFVSNVTT GYAPLAVKFT
DTSTGTPFSW TWNFGDGTFS TVKNPTHTYS KAGKYTVKLT ATNEGGNSTA AKTNYITVKT
TTVKPVAIFS ASPTSGKAPL KVTFTDKSTG SPTKWKWNFG DGSKSFLQNP SHKYSKAGKY
TVSLTVKNDK GSNTVTKTNY LTVVAKPVAA FSASPTSGKA PLKVTFTDKS TGSPTKWKWN
FGDGTTSAKQ NPIHKYSKAG KYKVTLTVAN AAGINTVTKT NYITVIAKPA AAFSASPTSG
KAPLKVTFSD KSTGTPTKWK WTFGDGSKSF LQNPTHKYSK AGKYKVILTV TNTAGSNTVT
KTNYITVVAK PVAAFSASPT SGKAPLKVTF SDKSTGTPTK WKWNFGDGAT SIKQNPVHKY
SNVGSYTVKL TVTNAAGSNT KTISNYIILK SK