12 homologs were found in PanDaTox collection
for query gene Lcho_1547 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_1547  hypothetical protein  100 
 
 
51 aa  105  3e-22  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.594579 
 
 
-
 
NC_007298  Daro_3994  heme exporter protein D  45.95 
 
 
66 aa  51.6  0.000004  Dechloromonas aromatica RCB  Bacteria  normal  0.692189  normal 
 
 
-
 
NC_010531  Pnec_1380  heme exporter protein CcmD  47.22 
 
 
62 aa  47  0.00008  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1367  heme exporter protein D  39.66 
 
 
62 aa  45.4  0.0002  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3632  heme exporter protein CcmD  42.22 
 
 
58 aa  45.1  0.0003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_3650  heme exporter protein CcmD  44 
 
 
58 aa  45.1  0.0004  Pseudomonas putida W619  Bacteria  normal  0.649562  normal 
 
 
-
 
NC_007908  Rfer_0042  Heme exporter protein D (CcmD)  44.74 
 
 
59 aa  44.3  0.0006  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2958  Heme exporter protein D  40 
 
 
58 aa  42.4  0.002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1211  hypothetical protein  45.95 
 
 
65 aa  42.7  0.002  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.284082  n/a   
 
 
-
 
NC_007005  Psyr_3390  Heme exporter protein D (CcmD)  37.78 
 
 
58 aa  42  0.003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.937654  normal 
 
 
-
 
NC_009379  Pnuc_1515  heme exporter protein D (CcmD)  40 
 
 
62 aa  41.2  0.005  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3893  heme exporter protein CcmD  38.46 
 
 
58 aa  40.8  0.006  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.00817898  normal 
 
 
-
 
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