More than 300 homologs were found in PanDaTox collection
for query gene Avi_6022 on replicon NC_011988
Organism: Agrobacterium vitis S4



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011988  Avi_6022  acyl-CoA dehydrogenase  100 
 
 
399 aa  820    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4124  acyl-CoA dehydrogenase domain protein  75.32 
 
 
393 aa  614  1e-175  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.993047 
 
 
-
 
NC_011369  Rleg2_3795  acyl-CoA dehydrogenase domain protein  74.81 
 
 
393 aa  610  1e-173  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  hitchhiker  0.00013086  normal  0.344818 
 
 
-
 
NC_009667  Oant_1476  acyl-CoA dehydrogenase protein  70.68 
 
 
390 aa  576  1.0000000000000001e-163  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0185  acyl-CoA dehydrogenase domain-containing protein  57.42 
 
 
387 aa  432  1e-120  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1718  acyl-CoA dehydrogenase domain protein  46.88 
 
 
428 aa  358  8e-98  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5837  acyl-CoA dehydrogenase-like protein  48.07 
 
 
400 aa  357  1.9999999999999998e-97  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0531  acyl-CoA dehydrogenase domain-containing protein  47.49 
 
 
407 aa  347  1e-94  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2526  putative acyl-CoA dehydrogenase  46.85 
 
 
425 aa  347  3e-94  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0280993 
 
 
-
 
NC_010515  Bcenmc03_3304  acyl-CoA dehydrogenase type 2  47.35 
 
 
398 aa  345  5e-94  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.890764  normal 
 
 
-
 
NC_008061  Bcen_4153  Acyl-CoA dehydrogenase, type 2-like  47.35 
 
 
398 aa  345  5e-94  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.240401  n/a   
 
 
-
 
NC_008543  Bcen2424_4213  acyl-CoA dehydrogenase type 2  47.35 
 
 
398 aa  345  5e-94  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.353379 
 
 
-
 
NC_007434  BURPS1710b_0818  acyl-CoA dehydrogenase domain-containing protein  48.35 
 
 
407 aa  345  1e-93  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0641  acyl-CoA dehydrogenase domain-containing protein  48.35 
 
 
407 aa  345  1e-93  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0655  acyl-CoA dehydrogenase domain-containing protein  48.35 
 
 
407 aa  345  1e-93  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0042  acyl-CoA dehydrogenase domain-containing protein  48.08 
 
 
407 aa  342  5e-93  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2888  acyl-CoA dehydrogenase domain-containing protein  48.08 
 
 
407 aa  342  5e-93  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2197  acyl-CoA dehydrogenase domain-containing protein  48.08 
 
 
407 aa  342  5e-93  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2510  acyl-CoA dehydrogenase domain-containing protein  48.08 
 
 
407 aa  342  5e-93  Burkholderia mallei NCTC 10247  Bacteria  normal  0.10491  n/a   
 
 
-
 
NC_007348  Reut_B5361  putative acyl-CoA dehydrogenase  46.05 
 
 
402 aa  341  1e-92  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3636  acyl-CoA dehydrogenase type 2  46.91 
 
 
398 aa  341  1e-92  Burkholderia ambifaria AMMD  Bacteria  normal  0.556701  normal 
 
 
-
 
NC_010552  BamMC406_4110  acyl-CoA dehydrogenase type 2  46.35 
 
 
398 aa  340  2.9999999999999998e-92  Burkholderia ambifaria MC40-6  Bacteria  normal  0.163636  normal 
 
 
-
 
NC_007511  Bcep18194_B1805  Acyl-CoA dehydrogenase-like  47.09 
 
 
398 aa  339  5e-92  Burkholderia sp. 383  Bacteria  normal  normal  0.723346 
 
 
-
 
NC_010511  M446_3403  acyl-CoA dehydrogenase type 2  48.34 
 
 
409 aa  339  5.9999999999999996e-92  Methylobacterium sp. 4-46  Bacteria  normal  0.0408106  normal  0.104533 
 
 
-
 
NC_010086  Bmul_4392  acyl-CoA dehydrogenase domain-containing protein  46.54 
 
 
398 aa  339  5.9999999999999996e-92  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4418  acyl-CoA dehydrogenase domain protein  47.51 
 
 
402 aa  336  5e-91  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.584473  n/a   
 
 
-
 
NC_010172  Mext_4597  acyl-CoA dehydrogenase domain-containing protein  46.93 
 
 
400 aa  334  2e-90  Methylobacterium extorquens PA1  Bacteria  normal  0.419077  normal  0.111113 
 
 
-
 
NC_007958  RPD_1095  acyl-CoA dehydrogenase-like  46.05 
 
 
408 aa  330  2e-89  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_5058  acyl-CoA dehydrogenase domain protein  46.13 
 
 
400 aa  325  6e-88  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.418777 
 
 
-
 
NC_007912  Sde_0166  putative carnitine operon oxidoreductase  43.53 
 
 
395 aa  322  6e-87  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0992  Acyl-CoA dehydrogenase-like  47.03 
 
 
408 aa  317  3e-85  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.297365 
 
 
-
 
NC_011004  Rpal_5079  Acyl-CoA dehydrogenase type 2 domain  47.72 
 
 
409 aa  313  3.9999999999999997e-84  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1077  acyl-CoA dehydrogenase domain protein  42.46 
 
 
385 aa  282  6.000000000000001e-75  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3056  acyl-CoA dehydrogenase domain-containing protein  29.53 
 
 
390 aa  149  1.0000000000000001e-34  Salinispora arenicola CNS-205  Bacteria  normal  0.432663  hitchhiker  0.00291671 
 
 
-
 
NC_009380  Strop_0683  acyl-CoA dehydrogenase type 2  28.88 
 
 
385 aa  139  1e-31  Salinispora tropica CNB-440  Bacteria  normal  0.998366  normal 
 
 
-
 
NC_010338  Caul_2948  acyl-CoA dehydrogenase domain-containing protein  23.77 
 
 
416 aa  92  2e-17  Caulobacter sp. K31  Bacteria  normal  0.0471344  normal 
 
 
-
 
NC_014150  Bmur_2643  acyl-CoA dehydrogenase domain protein  24.79 
 
 
371 aa  90.1  6e-17  Brachyspira murdochii DSM 12563  Bacteria  normal  0.475979  n/a   
 
 
-
 
NC_009485  BBta_4293  putative Acyl-CoA dehydrogenase  24.48 
 
 
398 aa  85.1  0.000000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  hitchhiker  0.004124 
 
 
-
 
NC_013131  Caci_0550  acyl-CoA dehydrogenase domain protein  24.25 
 
 
377 aa  82  0.00000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.193039  decreased coverage  0.00272664 
 
 
-
 
NC_007005  Psyr_3604  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  28 
 
 
393 aa  73.6  0.000000000007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.339437 
 
 
-
 
NC_013510  Tcur_1390  Acyl-CoA dehydrogenase type 2 domain protein  29.75 
 
 
384 aa  73.6  0.000000000007  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00428618  n/a   
 
 
-
 
NC_008726  Mvan_5885  acyl-CoA dehydrogenase domain-containing protein  24.01 
 
 
375 aa  72.4  0.00000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.468713 
 
 
-
 
NC_013947  Snas_0146  Acyl-CoA dehydrogenase type 2 domain-containing protein  27.32 
 
 
382 aa  72.4  0.00000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.658373 
 
 
-
 
NC_012034  Athe_1232  acyl-CoA dehydrogenase domain protein  22.53 
 
 
381 aa  72  0.00000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11696  acyl-CoA dehydrogenase fadE16  28.27 
 
 
373 aa  72  0.00000000002  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.392207 
 
 
-
 
NC_013440  Hoch_3778  acyl-CoA dehydrogenase domain protein  25.74 
 
 
382 aa  70.5  0.00000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.341587  normal  0.271407 
 
 
-
 
NC_008254  Meso_2091  Acyl-CoA dehydrogenase, type 2-like  31.47 
 
 
389 aa  70.5  0.00000000005  Chelativorans sp. BNC1  Bacteria  normal  0.424709  n/a   
 
 
-
 
NC_009380  Strop_4265  acyl-CoA dehydrogenase type 2  28.77 
 
 
387 aa  68.9  0.0000000001  Salinispora tropica CNB-440  Bacteria  normal  normal  0.184931 
 
 
-
 
NC_013159  Svir_20400  acyl-CoA dehydrogenase  29.2 
 
 
396 aa  68.9  0.0000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.170444  normal 
 
 
-
 
NC_009092  Shew_2570  acyl-CoA dehydrogenase domain-containing protein  22.95 
 
 
389 aa  68.2  0.0000000002  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1626  Acyl-CoA dehydrogenase type 2 domain protein  24.25 
 
 
387 aa  67.8  0.0000000003  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3633  acyl-CoA dehydrogenase domain-containing protein  23.79 
 
 
386 aa  67.4  0.0000000004  Paracoccus denitrificans PD1222  Bacteria  normal  0.0817586  normal  0.96391 
 
 
-
 
NC_008786  Veis_1333  acyl-CoA dehydrogenase domain-containing protein  27.1 
 
 
396 aa  67  0.0000000005  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0832215  hitchhiker  0.00420458 
 
 
-
 
NC_009439  Pmen_4334  acyl-CoA dehydrogenase type 2  25 
 
 
409 aa  66.6  0.0000000007  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_4073  acyl-CoA dehydrogenase domain-containing protein  25.21 
 
 
386 aa  66.6  0.0000000007  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_4391  acyl-CoA dehydrogenase domain-containing protein  22.5 
 
 
386 aa  66.2  0.000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0732  isovaleryl-CoA dehydrogenase  23.62 
 
 
387 aa  65.5  0.000000001  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0037  acyl-CoA dehydrogenase domain-containing protein  23.56 
 
 
387 aa  66.2  0.000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.119681  n/a   
 
 
-
 
NC_007517  Gmet_3289  isovaleryl-CoA dehydrogenase  23.74 
 
 
390 aa  65.1  0.000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3693  isovaleryl-CoA dehydrogenase  24.63 
 
 
390 aa  65.5  0.000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0017  isovaleryl-CoA dehydrogenase  23.28 
 
 
382 aa  64.7  0.000000003  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0182  butyryl-CoA dehydrogenase  24.85 
 
 
385 aa  64.3  0.000000003  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0191  butyryl-CoA dehydrogenase  24.85 
 
 
385 aa  64.3  0.000000003  Mycobacterium sp. KMS  Bacteria  normal  0.297032  normal 
 
 
-
 
NC_003909  BCE_2548  acyl-CoA dehydrogenase  24.79 
 
 
381 aa  63.9  0.000000004  Bacillus cereus ATCC 10987  Bacteria  normal  0.438014  n/a   
 
 
-
 
NC_006274  BCZK2285  acyl-CoA dehydrogenase  24.79 
 
 
381 aa  63.9  0.000000004  Bacillus cereus E33L  Bacteria  normal  0.769883  n/a   
 
 
-
 
NC_011658  BCAH187_A2603  acyl-CoA dehydrogenase  24.79 
 
 
381 aa  63.9  0.000000004  Bacillus cereus AH187  Bacteria  normal  0.608519  n/a   
 
 
-
 
NC_011725  BCB4264_A2511  acyl-CoA dehydrogenase  24.79 
 
 
381 aa  64.3  0.000000004  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4695  acyl-CoA dehydrogenase type 2  28.92 
 
 
387 aa  64.3  0.000000004  Salinispora arenicola CNS-205  Bacteria  normal  0.46169  normal  0.258533 
 
 
-
 
NC_011772  BCG9842_B2812  acyl-CoA dehydrogenase  24.79 
 
 
381 aa  64.3  0.000000004  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000163693 
 
 
-
 
NC_005957  BT9727_2327  acyl-CoA dehydrogenase  24.51 
 
 
381 aa  63.9  0.000000005  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2560  acyl-CoA dehydrogenase  24.51 
 
 
381 aa  63.9  0.000000005  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  4.1486499999999994e-20 
 
 
-
 
NC_007969  Pcryo_0344  acyl-CoA dehydrogenase-like  23.62 
 
 
395 aa  63.9  0.000000005  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_3863  acyl-CoA dehydrogenase domain-containing protein  24.33 
 
 
376 aa  63.5  0.000000006  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2780  acyl-CoA dehydrogenase domain-containing protein  22 
 
 
390 aa  63.5  0.000000007  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0393743 
 
 
-
 
NC_007530  GBAA_2547  acyl-CoA dehydrogenase  24.5 
 
 
381 aa  63.2  0.000000007  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4263  acyl-CoA dehydrogenase-like  22.89 
 
 
390 aa  63.2  0.000000007  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.662141  normal  0.561312 
 
 
-
 
NC_008786  Veis_0226  acyl-CoA dehydrogenase domain-containing protein  24.13 
 
 
388 aa  63.2  0.000000007  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.597403  normal 
 
 
-
 
NC_006368  lpp1787  hypothetical protein  23.38 
 
 
389 aa  62.8  0.000000009  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1788  hypothetical protein  23.38 
 
 
389 aa  63.2  0.000000009  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_1109  acyl-CoA dehydrogenase domain-containing protein  21.07 
 
 
388 aa  62.8  0.00000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.168915  normal 
 
 
-
 
NC_009428  Rsph17025_2013  acyl-CoA dehydrogenase domain-containing protein  22.09 
 
 
385 aa  62.4  0.00000001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.392534  normal 
 
 
-
 
NC_005945  BAS2369  acyl-CoA dehydrogenase  24.51 
 
 
381 aa  62.8  0.00000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.73982  n/a   
 
 
-
 
NC_007517  Gmet_3306  Acyl-CoA dehydrogenase-like  24.86 
 
 
380 aa  62.4  0.00000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0488  butyryl-CoA dehydrogenase  24.21 
 
 
379 aa  62.4  0.00000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00678793  n/a   
 
 
-
 
NC_008782  Ajs_3779  isovaleryl-CoA dehydrogenase  22.64 
 
 
396 aa  62.4  0.00000001  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3575  acyl-CoA dehydrogenase domain protein  22.91 
 
 
380 aa  62.8  0.00000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0289  acyl-CoA dehydrogenase domain protein  23.88 
 
 
391 aa  62.8  0.00000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0226098  n/a   
 
 
-
 
NC_002947  PP_4064  acyl-CoA dehydrogenase domain-containing protein  23.92 
 
 
424 aa  62  0.00000002  Pseudomonas putida KT2440  Bacteria  normal  0.322511  hitchhiker  0.0046695 
 
 
-
 
NC_004310  BR0020  isovaleryl-CoA dehydrogenase  22.99 
 
 
382 aa  62  0.00000002  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0137  acyl-CoA dehydrogenase domain protein  21.76 
 
 
393 aa  62  0.00000002  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013171  Apre_1356  acyl-CoA dehydrogenase domain protein  21.43 
 
 
379 aa  62.4  0.00000002  Anaerococcus prevotii DSM 20548  Bacteria  unclonable  0.00000000100384  n/a   
 
 
-
 
NC_013411  GYMC61_2439  acyl-CoA dehydrogenase domain protein  22.09 
 
 
380 aa  62.4  0.00000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009049  Rsph17029_1168  acyl-CoA dehydrogenase domain-containing protein  22.7 
 
 
385 aa  61.6  0.00000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.437637  normal 
 
 
-
 
NC_009952  Dshi_1297  acyl-CoA dehydrogenase domain protein  22.86 
 
 
387 aa  62  0.00000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.329164  normal  0.246274 
 
 
-
 
NC_007778  RPB_3933  Acyl-CoA dehydrogenase-like  24.14 
 
 
390 aa  61.6  0.00000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.218287  normal 
 
 
-
 
NC_007802  Jann_1142  isovaleryl-CoA dehydrogenase  23.28 
 
 
386 aa  62  0.00000002  Jannaschia sp. CCS1  Bacteria  normal  0.268805  normal  0.402986 
 
 
-
 
NC_009512  Pput_1777  acyl-CoA dehydrogenase domain-containing protein  23.92 
 
 
387 aa  62  0.00000002  Pseudomonas putida F1  Bacteria  normal  normal  0.0186488 
 
 
-
 
NC_010682  Rpic_0129  acyl-CoA dehydrogenase domain protein  21.76 
 
 
393 aa  61.6  0.00000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4588  acyl-CoA dehydrogenase domain-containing protein  22.22 
 
 
393 aa  62  0.00000002  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4190  isovaleryl-CoA dehydrogenase  23.58 
 
 
393 aa  61.2  0.00000003  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>