169 homologs were found in PanDaTox collection
for query gene Ssed_4428 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_4428  DNA binding domain-containing protein  100 
 
 
301 aa  628  1e-179  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4820  DNA binding domain-containing protein  95.02 
 
 
301 aa  607  9.999999999999999e-173  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0052  DNA binding domain-containing protein  84.95 
 
 
301 aa  552  1e-156  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_4144  DNA binding domain-containing protein  82.94 
 
 
301 aa  541  1e-153  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0344  DNA binding domain-containing protein  80.4 
 
 
301 aa  528  1e-149  Shewanella putrefaciens CN-32  Bacteria  decreased coverage  0.0000000433328  n/a   
 
 
-
 
NC_011663  Sbal223_0240  DNA binding domain protein, excisionase family  79.73 
 
 
301 aa  526  1e-148  Shewanella baltica OS223  Bacteria  normal  0.256207  hitchhiker  0.000155098 
 
 
-
 
NC_009052  Sbal_4129  DNA binding domain-containing protein  79.73 
 
 
301 aa  526  1e-148  Shewanella baltica OS155  Bacteria  hitchhiker  0.000950861  n/a   
 
 
-
 
NC_009665  Shew185_4099  DNA binding domain-containing protein  79.73 
 
 
301 aa  526  1e-148  Shewanella baltica OS185  Bacteria  hitchhiker  0.00105408  n/a   
 
 
-
 
NC_009997  Sbal195_4217  DNA binding domain-containing protein  79.73 
 
 
301 aa  526  1e-148  Shewanella baltica OS195  Bacteria  hitchhiker  0.00203903  normal  0.426085 
 
 
-
 
NC_008321  Shewmr4_3713  DNA binding domain-containing protein  79.07 
 
 
301 aa  522  1e-147  Shewanella sp. MR-4  Bacteria  normal  0.017295  normal  0.392744 
 
 
-
 
NC_008322  Shewmr7_3784  DNA binding domain-containing protein  78.74 
 
 
301 aa  522  1e-147  Shewanella sp. MR-7  Bacteria  unclonable  0.00000134193  normal  0.867769 
 
 
-
 
NC_008577  Shewana3_3909  DNA binding domain-containing protein  78.74 
 
 
301 aa  521  1e-147  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00007474  normal 
 
 
-
 
NC_004347  SO_4502  hypothetical protein  78.74 
 
 
301 aa  518  1e-146  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_3620  hypothetical protein  72.24 
 
 
302 aa  468  1.0000000000000001e-131  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1908  excisionase/Xis, DNA-binding  49.31 
 
 
307 aa  306  4.0000000000000004e-82  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_3717  DNA binding domain protein, excisionase family  41.89 
 
 
307 aa  249  5e-65  Thauera sp. MZ1T  Bacteria  normal  0.222458  n/a   
 
 
-
 
NC_007498  Pcar_0674  molybdate-binding domain-containing protein  29.9 
 
 
304 aa  125  8.000000000000001e-28  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  1.95042e-17  n/a   
 
 
-
 
NC_008340  Mlg_2745  DNA binding domain-containing protein  30.79 
 
 
300 aa  124  2e-27  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0194  DNA binding domain-containing protein  29.8 
 
 
303 aa  122  8e-27  Desulfovibrio vulgaris DP4  Bacteria  normal  0.741486  normal 
 
 
-
 
NC_009943  Dole_0369  DNA binding domain-containing protein  28.19 
 
 
308 aa  119  7.999999999999999e-26  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.0000403691  n/a   
 
 
-
 
NC_008043  TM1040_3033  excisionase/Xis, DNA-binding  30.41 
 
 
304 aa  119  9e-26  Ruegeria sp. TM1040  Bacteria  normal  0.627333  normal 
 
 
-
 
NC_009952  Dshi_0629  periplasmic substrate-binding protein  31.39 
 
 
290 aa  118  9.999999999999999e-26  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_0119  excisionase/Xis, DNA-binding  27.72 
 
 
309 aa  117  3e-25  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0333  DNA binding domain protein, excisionase family  29.32 
 
 
296 aa  109  7.000000000000001e-23  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0102766 
 
 
-
 
NC_011769  DvMF_2264  DNA binding domain protein, excisionase family  27.1 
 
 
328 aa  108  9.000000000000001e-23  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009621  Smed_5502  DNA binding domain-containing protein  28.14 
 
 
291 aa  108  2e-22  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2438  DNA binding domain-containing protein  29.76 
 
 
291 aa  102  6e-21  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_0048  DNA binding domain-containing protein  26.49 
 
 
296 aa  102  6e-21  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.774788 
 
 
-
 
NC_011831  Cagg_1164  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  29.69 
 
 
655 aa  89.4  7e-17  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.811833  hitchhiker  0.00369459 
 
 
-
 
NC_010681  Bphyt_3020  transcriptional regulator of molybdate metabolism, LysR family  29.82 
 
 
359 aa  87.8  2e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0475131  normal  0.0124041 
 
 
-
 
NC_010718  Nther_0447  molybdenum cofactor synthesis domain protein  29.61 
 
 
642 aa  88.2  2e-16  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.583292  normal 
 
 
-
 
NC_013440  Hoch_4308  transcriptional regulator of molybdate metabolism, XRE family  29.36 
 
 
378 aa  87.8  2e-16  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1737  DNA binding domain protein, excisionase family  28.29 
 
 
315 aa  87.4  2e-16  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1894  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  27.47 
 
 
640 aa  88.2  2e-16  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.116253  n/a   
 
 
-
 
NC_013517  Sterm_1676  molybdenum cofactor synthesis domain protein  26.45 
 
 
633 aa  87  3e-16  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4561  DNA binding domain protein, excisionase family  30.04 
 
 
335 aa  86.7  4e-16  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000373649  n/a   
 
 
-
 
NC_007951  Bxe_A0967  molybdate metabolism transcriptional regulator  29.55 
 
 
359 aa  85.9  7e-16  Burkholderia xenovorans LB400  Bacteria  normal  0.930984  normal 
 
 
-
 
NC_008346  Swol_0801  molybdenum cofactor biosynthesis protein  28 
 
 
639 aa  84.7  0.000000000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0881  molybdenum cofactor synthesis domain protein  29.2 
 
 
624 aa  83.6  0.000000000000003  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.542033  n/a   
 
 
-
 
NC_009635  Maeo_1124  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  28.19 
 
 
668 aa  83.6  0.000000000000004  Methanococcus aeolicus Nankai-3  Archaea  normal  0.352674  n/a   
 
 
-
 
NC_008751  Dvul_0382  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  26.32 
 
 
650 aa  81.3  0.00000000000002  Desulfovibrio vulgaris DP4  Bacteria  normal  0.690457  normal 
 
 
-
 
NC_010320  Teth514_1391  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  26.87 
 
 
635 aa  80.9  0.00000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_0664  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  30.04 
 
 
621 aa  79.7  0.00000000000006  Methanospirillum hungatei JF-1  Archaea  normal  0.509419  normal 
 
 
-
 
NC_008825  Mpe_A0339  molybdate metabolism transcriptional regulator  28.12 
 
 
358 aa  79.3  0.00000000000006  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0730  molybdate metabolism transcriptional regulator  27.94 
 
 
360 aa  78.6  0.0000000000001  Burkholderia phymatum STM815  Bacteria  normal  normal  0.739883 
 
 
-
 
NC_009954  Cmaq_0083  molybdenum cofactor synthesis domain-containing protein  25.36 
 
 
655 aa  78.6  0.0000000000001  Caldivirga maquilingensis IC-167  Archaea  normal  0.536917  normal  0.152284 
 
 
-
 
NC_010003  Pmob_0374  molybdenum cofactor synthesis domain-containing protein  25 
 
 
632 aa  77.4  0.0000000000002  Petrotoga mobilis SJ95  Bacteria  normal  0.858069  n/a   
 
 
-
 
NC_009253  Dred_2878  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  29.91 
 
 
644 aa  76.3  0.0000000000005  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_0555  molybdate metabolism transcriptional regulator  29.1 
 
 
368 aa  75.9  0.0000000000008  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.601772  n/a   
 
 
-
 
NC_008542  Bcen2424_1034  molybdate metabolism transcriptional regulator  29.1 
 
 
368 aa  75.9  0.0000000000008  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0993  molybdate metabolism transcriptional regulator  29.1 
 
 
368 aa  75.1  0.000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0233787  normal 
 
 
-
 
NC_007510  Bcep18194_A4147  molybdate metabolism transcriptional regulator  29.1 
 
 
368 aa  75.5  0.000000000001  Burkholderia sp. 383  Bacteria  normal  0.70321  normal 
 
 
-
 
NC_008698  Tpen_1054  molybdenum cofactor synthesis domain-containing protein  26.18 
 
 
651 aa  75.1  0.000000000001  Thermofilum pendens Hrk 5  Archaea  normal  0.39347  n/a   
 
 
-
 
NC_009767  Rcas_1861  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  28.45 
 
 
647 aa  75.5  0.000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.72567 
 
 
-
 
NC_009943  Dole_0684  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  27.04 
 
 
648 aa  75.1  0.000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2363  molybdate metabolism transcriptional regulator  31.17 
 
 
368 aa  75.1  0.000000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0616  molybdate metabolism transcriptional regulator  27 
 
 
365 aa  74.7  0.000000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.0588457  n/a   
 
 
-
 
NC_009975  MmarC6_0347  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  26.23 
 
 
616 aa  74.7  0.000000000002  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_009637  MmarC7_1564  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  25.68 
 
 
616 aa  73.6  0.000000000004  Methanococcus maripaludis C7  Archaea  normal  normal  0.292001 
 
 
-
 
NC_011883  Ddes_1772  molybdenum cofactor synthesis domain protein  26.4 
 
 
649 aa  73.2  0.000000000005  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1158  DNA binding domain protein, excisionase family  28.71 
 
 
320 aa  72.4  0.000000000009  Sebaldella termitidis ATCC 33386  Bacteria  unclonable  0.000000000597249  n/a   
 
 
-
 
NC_008390  Bamb_0898  molybdate metabolism transcriptional regulator  28.27 
 
 
368 aa  72.4  0.000000000009  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0910  molybdate metabolism transcriptional regulator  28.27 
 
 
368 aa  72.4  0.000000000009  Burkholderia ambifaria MC40-6  Bacteria  normal  0.527444  normal  0.0178578 
 
 
-
 
NC_013411  GYMC61_0812  DNA binding domain protein, excisionase family  25.55 
 
 
308 aa  72  0.00000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007519  Dde_3228  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  26.64 
 
 
666 aa  72  0.00000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0615  molybdenum cofactor synthesis domain-containing protein  24.36 
 
 
651 aa  72.4  0.00000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_2110  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  26.32 
 
 
649 aa  71.6  0.00000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0934426 
 
 
-
 
NC_009135  MmarC5_1062  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  24.18 
 
 
616 aa  72  0.00000000001  Methanococcus maripaludis C5  Archaea  normal  0.92784  n/a   
 
 
-
 
NC_007651  BTH_I1625  molybdate transport repressor  31.17 
 
 
368 aa  71.2  0.00000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1453  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  27.04 
 
 
652 aa  70.9  0.00000000003  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009634  Mevan_1699  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  28.22 
 
 
616 aa  69.7  0.00000000006  Methanococcus vannielii SB  Archaea  normal  0.128773  n/a   
 
 
-
 
NC_007973  Rmet_0552  molybdate metabolism transcriptional regulator  27.53 
 
 
373 aa  69.3  0.00000000007  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.269597 
 
 
-
 
NC_011769  DvMF_1797  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  26.75 
 
 
655 aa  68.9  0.00000000009  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.984095 
 
 
-
 
NC_005957  BT9727_0190  molybdate-binding protein  21.17 
 
 
315 aa  68.6  0.0000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0229  putative molybdopterin biosynthesis protein  21.57 
 
 
306 aa  68.6  0.0000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5098  periplasmic molybdate-binding protein  21.22 
 
 
306 aa  68.2  0.0000000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0201  DNA binding domain-containing protein  22.3 
 
 
305 aa  68.6  0.0000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0223  molybdopterin biosynthesis protein, putative  21.74 
 
 
315 aa  67.8  0.0000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3707  periplasmic-binding protein  27.05 
 
 
361 aa  68.2  0.0000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.337443  normal  0.775197 
 
 
-
 
NC_011658  BCAH187_A0246  putative molybdopterin biosynthesis protein  20.85 
 
 
306 aa  66.6  0.0000000005  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_24590  molybdenum cofactor synthesis domain protein  25.44 
 
 
645 aa  66.2  0.0000000007  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_1821  putative molybdate-binding protein  25.96 
 
 
294 aa  66.2  0.0000000007  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2591  molybdate transport repressor  29.87 
 
 
359 aa  65.1  0.000000001  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0963  molybdate transport repressor  29.87 
 
 
359 aa  65.1  0.000000001  Burkholderia mallei NCTC 10229  Bacteria  normal  0.386261  n/a   
 
 
-
 
NC_009074  BURPS668_2898  LysR family transcriptional regulator  29.87 
 
 
359 aa  65.1  0.000000001  Burkholderia pseudomallei 668  Bacteria  normal  0.392199  n/a   
 
 
-
 
NC_009076  BURPS1106A_2960  LysR family transcriptional regulator  29.87 
 
 
359 aa  65.1  0.000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0184  molybdate transport repressor  29.87 
 
 
359 aa  65.1  0.000000001  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0920  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  26.47 
 
 
644 aa  65.1  0.000000001  Ammonifex degensii KC4  Bacteria  normal  0.0353995  n/a   
 
 
-
 
NC_013173  Dbac_0985  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  24.58 
 
 
644 aa  65.5  0.000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.587268  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0187  DNA binding domain-containing protein  22.92 
 
 
306 aa  64.3  0.000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_4072  helix-turn-helix domain protein  23.63 
 
 
380 aa  64.3  0.000000002  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0446  molybdate transport repressor  29.87 
 
 
344 aa  65.1  0.000000002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3008  regulatory protein  29.87 
 
 
344 aa  65.1  0.000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009051  Memar_0405  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  26.38 
 
 
636 aa  64.7  0.000000002  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_012791  Vapar_3016  transcriptional regulator of molybdate metabolism, LysR family  25.62 
 
 
370 aa  64.7  0.000000002  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0204  molybdopterin biosynthesis protein  20.52 
 
 
306 aa  63.9  0.000000003  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0205  molybdopterin biosynthesis protein  20.52 
 
 
306 aa  63.9  0.000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1796  molybdate-binding domain-containing protein  25.1 
 
 
289 aa  64.3  0.000000003  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0222  putative molybdopterin biosynthesis protein  20.52 
 
 
306 aa  63.9  0.000000003  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013216  Dtox_0019  DNA binding domain protein, excisionase family  23.88 
 
 
326 aa  63.5  0.000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
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