Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4428 |
Symbol | |
ID | 5611664 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5411486 |
End bp | 5412391 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640935398 |
Product | DNA binding domain-containing protein |
Protein accession | YP_001476158 |
Protein GI | 157377558 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1910] Periplasmic molybdate-binding protein/domain |
TIGRFAM ID | [TIGR01764] DNA binding domain, excisionase family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGAAC CAAGCGAACT CGTCTACATG AGCGCAAAAC AGGTCGCTGA GTATTTAGAT CTTAATGAAA AAAAGGTCTA TGCCATGGCG AACGACAGAG TCTTACCCGC GACTAAAATC ACGGGTAAAT GGCTGTTTCC TAAGATTCTT ATAGACCGCT GGATCATGGA TTCTTGCCAC AGCGGCATGC TGTCAGATCG TATGCATATC ACAGGCAGCG ATGACCCTCT GCTGTCTATG CTGGTCTCCC GCTTGATGAC CCAGATTGGT AAGAGCGACT TGATCAGTTA CAGCTCGACC GGTTCACGAA TGGGCTTAGA TCTCCTGTCC CGTGGCTACG CCGATGTCTG CACACTGCAC TGGGGTAGCG TAGATGAACG TAACATCCGC CACCCGGCAC TGCTTAAGGG CTACGCCAAC CACCAGCAAT GGGTCATGGT TCACGGTTAT ACCCGTAAGC AGGGGCTGAT GGTACGCAAC GATATGCTGC AACAATGTCA GGAGGAGGAT AAGATTGCCT CGCTGCCCTG GCGCTGGGTC GACAGACAGG CAGGCGCAGG CAGTCAACAA CACCTGGAAC ACTGGCTAAT GAAGCAAGGC GCCGCCCTGT CTCATCTTAA CGCCAATGTC ACCGCCTACA GCGAGCGTGA ACTCGCCGCC TTTATCGCTC GTGGCGATGC CGATATCGGT TTCGGCTGCA AATCGGTTGC TATGGAGAGT GGCCTCAGCT TTATACCGTT GGTCACAGAA TCCTTCGACT TCGTCATGCC ACAGGGGATC TACTTCCGCC GCCAGCTGCA GCACCTGTTC GATATGCTTG CCAGCACCCA GACACGGCAA CTGGCCGCCA CGTTAGGTGG GTATGATCTC ACTGACTGTG GGCAGTTGCT GTGGAATCCT AGTTAG
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Protein sequence | MTEPSELVYM SAKQVAEYLD LNEKKVYAMA NDRVLPATKI TGKWLFPKIL IDRWIMDSCH SGMLSDRMHI TGSDDPLLSM LVSRLMTQIG KSDLISYSST GSRMGLDLLS RGYADVCTLH WGSVDERNIR HPALLKGYAN HQQWVMVHGY TRKQGLMVRN DMLQQCQEED KIASLPWRWV DRQAGAGSQQ HLEHWLMKQG AALSHLNANV TAYSERELAA FIARGDADIG FGCKSVAMES GLSFIPLVTE SFDFVMPQGI YFRRQLQHLF DMLASTQTRQ LAATLGGYDL TDCGQLLWNP S
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