Gene Ssed_4428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4428 
Symbol 
ID5611664 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5411486 
End bp5412391 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content54% 
IMG OID640935398 
ProductDNA binding domain-containing protein 
Protein accessionYP_001476158 
Protein GI157377558 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1910] Periplasmic molybdate-binding protein/domain 
TIGRFAM ID[TIGR01764] DNA binding domain, excisionase family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGAAC CAAGCGAACT CGTCTACATG AGCGCAAAAC AGGTCGCTGA GTATTTAGAT 
CTTAATGAAA AAAAGGTCTA TGCCATGGCG AACGACAGAG TCTTACCCGC GACTAAAATC
ACGGGTAAAT GGCTGTTTCC TAAGATTCTT ATAGACCGCT GGATCATGGA TTCTTGCCAC
AGCGGCATGC TGTCAGATCG TATGCATATC ACAGGCAGCG ATGACCCTCT GCTGTCTATG
CTGGTCTCCC GCTTGATGAC CCAGATTGGT AAGAGCGACT TGATCAGTTA CAGCTCGACC
GGTTCACGAA TGGGCTTAGA TCTCCTGTCC CGTGGCTACG CCGATGTCTG CACACTGCAC
TGGGGTAGCG TAGATGAACG TAACATCCGC CACCCGGCAC TGCTTAAGGG CTACGCCAAC
CACCAGCAAT GGGTCATGGT TCACGGTTAT ACCCGTAAGC AGGGGCTGAT GGTACGCAAC
GATATGCTGC AACAATGTCA GGAGGAGGAT AAGATTGCCT CGCTGCCCTG GCGCTGGGTC
GACAGACAGG CAGGCGCAGG CAGTCAACAA CACCTGGAAC ACTGGCTAAT GAAGCAAGGC
GCCGCCCTGT CTCATCTTAA CGCCAATGTC ACCGCCTACA GCGAGCGTGA ACTCGCCGCC
TTTATCGCTC GTGGCGATGC CGATATCGGT TTCGGCTGCA AATCGGTTGC TATGGAGAGT
GGCCTCAGCT TTATACCGTT GGTCACAGAA TCCTTCGACT TCGTCATGCC ACAGGGGATC
TACTTCCGCC GCCAGCTGCA GCACCTGTTC GATATGCTTG CCAGCACCCA GACACGGCAA
CTGGCCGCCA CGTTAGGTGG GTATGATCTC ACTGACTGTG GGCAGTTGCT GTGGAATCCT
AGTTAG
 
Protein sequence
MTEPSELVYM SAKQVAEYLD LNEKKVYAMA NDRVLPATKI TGKWLFPKIL IDRWIMDSCH 
SGMLSDRMHI TGSDDPLLSM LVSRLMTQIG KSDLISYSST GSRMGLDLLS RGYADVCTLH
WGSVDERNIR HPALLKGYAN HQQWVMVHGY TRKQGLMVRN DMLQQCQEED KIASLPWRWV
DRQAGAGSQQ HLEHWLMKQG AALSHLNANV TAYSERELAA FIARGDADIG FGCKSVAMES
GLSFIPLVTE SFDFVMPQGI YFRRQLQHLF DMLASTQTRQ LAATLGGYDL TDCGQLLWNP
S