234 homologs were found in PanDaTox collection
for query gene Vapar_3016 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_3016  transcriptional regulator of molybdate metabolism, LysR family  100 
 
 
370 aa  758    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3707  periplasmic-binding protein  59.03 
 
 
361 aa  417  9.999999999999999e-116  Methylibium petroleiphilum PM1  Bacteria  normal  0.337443  normal  0.775197 
 
 
-
 
NC_007347  Reut_A0616  molybdate metabolism transcriptional regulator  50.54 
 
 
365 aa  353  2e-96  Ralstonia eutropha JMP134  Bacteria  normal  0.0588457  n/a   
 
 
-
 
NC_007973  Rmet_0552  molybdate metabolism transcriptional regulator  47.11 
 
 
373 aa  321  9.999999999999999e-87  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.269597 
 
 
-
 
NC_008825  Mpe_A0339  molybdate metabolism transcriptional regulator  51.55 
 
 
358 aa  320  1.9999999999999998e-86  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0386  molybdate metabolism transcriptional regulator  48.17 
 
 
362 aa  314  1.9999999999999998e-84  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3840  molybdate metabolism transcriptional regulator  44.26 
 
 
361 aa  299  5e-80  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.335089  normal  0.579265 
 
 
-
 
NC_008785  BMASAVP1_A2591  molybdate transport repressor  47.49 
 
 
359 aa  284  1.0000000000000001e-75  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0963  molybdate transport repressor  47.49 
 
 
359 aa  284  1.0000000000000001e-75  Burkholderia mallei NCTC 10229  Bacteria  normal  0.386261  n/a   
 
 
-
 
NC_009074  BURPS668_2898  LysR family transcriptional regulator  47.49 
 
 
359 aa  284  1.0000000000000001e-75  Burkholderia pseudomallei 668  Bacteria  normal  0.392199  n/a   
 
 
-
 
NC_009076  BURPS1106A_2960  LysR family transcriptional regulator  47.49 
 
 
359 aa  284  1.0000000000000001e-75  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0184  molybdate transport repressor  47.49 
 
 
359 aa  284  1.0000000000000001e-75  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1625  molybdate transport repressor  46 
 
 
368 aa  284  2.0000000000000002e-75  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0967  molybdate metabolism transcriptional regulator  41.24 
 
 
359 aa  281  9e-75  Burkholderia xenovorans LB400  Bacteria  normal  0.930984  normal 
 
 
-
 
NC_010681  Bphyt_3020  transcriptional regulator of molybdate metabolism, LysR family  41.69 
 
 
359 aa  281  1e-74  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0475131  normal  0.0124041 
 
 
-
 
NC_006348  BMA0446  molybdate transport repressor  47.99 
 
 
344 aa  280  3e-74  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3008  regulatory protein  47.99 
 
 
344 aa  280  3e-74  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4147  molybdate metabolism transcriptional regulator  44.57 
 
 
368 aa  280  3e-74  Burkholderia sp. 383  Bacteria  normal  0.70321  normal 
 
 
-
 
NC_008060  Bcen_0555  molybdate metabolism transcriptional regulator  44.93 
 
 
368 aa  280  4e-74  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.601772  n/a   
 
 
-
 
NC_008542  Bcen2424_1034  molybdate metabolism transcriptional regulator  44.93 
 
 
368 aa  280  4e-74  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0993  molybdate metabolism transcriptional regulator  44.93 
 
 
368 aa  280  4e-74  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0233787  normal 
 
 
-
 
NC_010551  BamMC406_0910  molybdate metabolism transcriptional regulator  44.64 
 
 
368 aa  274  1.0000000000000001e-72  Burkholderia ambifaria MC40-6  Bacteria  normal  0.527444  normal  0.0178578 
 
 
-
 
NC_008390  Bamb_0898  molybdate metabolism transcriptional regulator  44.64 
 
 
368 aa  274  1.0000000000000001e-72  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0730  molybdate metabolism transcriptional regulator  41.57 
 
 
360 aa  273  5.000000000000001e-72  Burkholderia phymatum STM815  Bacteria  normal  normal  0.739883 
 
 
-
 
NC_010084  Bmul_2363  molybdate metabolism transcriptional regulator  41.85 
 
 
368 aa  269  5e-71  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1822  molybdate metabolism transcriptional regulator  41.23 
 
 
386 aa  240  2.9999999999999997e-62  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00250223 
 
 
-
 
NC_007908  Rfer_2870  molybdate metabolism transcriptional regulator  40.79 
 
 
372 aa  234  2.0000000000000002e-60  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1757  molybdate metabolism transcriptional regulator  38.35 
 
 
371 aa  227  3e-58  Polaromonas sp. JS666  Bacteria  normal  normal  0.175288 
 
 
-
 
NC_011662  Tmz1t_0203  transcriptional regulator of molybdate metabolism, LysR family  39.39 
 
 
374 aa  224  1e-57  Thauera sp. MZ1T  Bacteria  normal  0.433996  n/a   
 
 
-
 
NC_011992  Dtpsy_2477  transcriptional regulator of molybdate metabolism, LysR family  36.59 
 
 
373 aa  219  3.9999999999999997e-56  Acidovorax ebreus TPSY  Bacteria  normal  0.497113  n/a   
 
 
-
 
NC_008781  Pnap_1508  molybdate metabolism transcriptional regulator  37.36 
 
 
375 aa  219  5e-56  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3130  molybdate metabolism transcriptional regulator  36.31 
 
 
373 aa  218  1e-55  Acidovorax sp. JS42  Bacteria  normal  0.839309  normal  0.445387 
 
 
-
 
NC_012791  Vapar_1577  transcriptional regulator of molybdate metabolism, LysR family  40.48 
 
 
369 aa  208  1e-52  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2243  transcriptional regulator of molybdate metabolism, LysR family  35.01 
 
 
366 aa  187  3e-46  Ralstonia pickettii 12J  Bacteria  normal  0.963081  normal 
 
 
-
 
NC_003295  RSc2092  hypothetical protein  35.71 
 
 
366 aa  186  4e-46  Ralstonia solanacearum GMI1000  Bacteria  normal  0.306178  normal 
 
 
-
 
NC_007347  Reut_A0932  regulatory protein, LysR  36.31 
 
 
365 aa  186  5e-46  Ralstonia eutropha JMP134  Bacteria  normal  0.658319  n/a   
 
 
-
 
NC_008825  Mpe_A2224  molybdate metabolism transcriptional regulator  37.61 
 
 
375 aa  185  1.0000000000000001e-45  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1919  transcriptional regulator of molybdate metabolism, LysR family  34.42 
 
 
366 aa  185  1.0000000000000001e-45  Ralstonia pickettii 12D  Bacteria  normal  0.360263  normal  0.895882 
 
 
-
 
NC_007973  Rmet_0896  molybdate metabolism transcriptional regulator  36.01 
 
 
365 aa  180  2.9999999999999997e-44  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1400  transcriptional regulator of molybdate metabolism, LysR family  43.94 
 
 
339 aa  168  1e-40  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.306238  n/a   
 
 
-
 
NC_010725  Mpop_2967  transcriptional regulator of molybdate metabolism, LysR family  37.2 
 
 
353 aa  166  4e-40  Methylobacterium populi BJ001  Bacteria  normal  0.23709  normal 
 
 
-
 
NC_010511  M446_0839  molybdate metabolism transcriptional regulator  43.64 
 
 
339 aa  160  3e-38  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2849  regulatory protein LysR  37.9 
 
 
345 aa  159  6e-38  Methylobacterium extorquens PA1  Bacteria  normal  0.312034  normal 
 
 
-
 
NC_009943  Dole_0684  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  40.17 
 
 
648 aa  159  1e-37  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3075  transcriptional regulator of molybdate metabolism, LysR family  37.58 
 
 
346 aa  158  2e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0506443  normal 
 
 
-
 
NC_010172  Mext_3806  regulatory protein LysR  37.67 
 
 
347 aa  157  2e-37  Methylobacterium extorquens PA1  Bacteria  normal  0.44955  normal 
 
 
-
 
NC_011757  Mchl_3787  transcriptional regulator, LysR family  37.31 
 
 
358 aa  156  5.0000000000000005e-37  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.387361 
 
 
-
 
NC_008751  Dvul_0382  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  34.74 
 
 
650 aa  154  2e-36  Desulfovibrio vulgaris DP4  Bacteria  normal  0.690457  normal 
 
 
-
 
NC_011757  Mchl_0222  transcriptional regulator of molybdate metabolism, LysR family  37 
 
 
347 aa  154  2e-36  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1335  molybdate metabolism transcriptional regulator  34.38 
 
 
340 aa  153  4e-36  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1797  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  38.89 
 
 
655 aa  152  1e-35  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.984095 
 
 
-
 
NC_010172  Mext_3479  regulatory protein LysR  36.42 
 
 
373 aa  151  1e-35  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1894  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  38.16 
 
 
640 aa  149  8e-35  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.116253  n/a   
 
 
-
 
NC_007519  Dde_3228  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  37.28 
 
 
666 aa  142  9.999999999999999e-33  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1453  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  36.36 
 
 
652 aa  140  3e-32  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1164  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  39.24 
 
 
655 aa  139  7.999999999999999e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.811833  hitchhiker  0.00369459 
 
 
-
 
NC_010725  Mpop_0210  transcriptional regulator of molybdate metabolism, LysR family  35.49 
 
 
348 aa  139  1e-31  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_4561  DNA binding domain protein, excisionase family  38.54 
 
 
335 aa  138  2e-31  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000373649  n/a   
 
 
-
 
NC_013223  Dret_2110  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  37.55 
 
 
649 aa  135  9.999999999999999e-31  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0934426 
 
 
-
 
NC_013173  Dbac_0985  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  34.42 
 
 
644 aa  134  1.9999999999999998e-30  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.587268  n/a   
 
 
-
 
NC_009767  Rcas_1861  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  40.34 
 
 
647 aa  134  3e-30  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.72567 
 
 
-
 
NC_010718  Nther_0447  molybdenum cofactor synthesis domain protein  31.07 
 
 
642 aa  133  6e-30  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.583292  normal 
 
 
-
 
NC_008554  Sfum_0615  molybdenum cofactor synthesis domain-containing protein  39.39 
 
 
651 aa  130  3e-29  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_24590  molybdenum cofactor synthesis domain protein  46.58 
 
 
645 aa  129  7.000000000000001e-29  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0812  DNA binding domain protein, excisionase family  33.33 
 
 
308 aa  128  1.0000000000000001e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_1391  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  35.92 
 
 
635 aa  127  4.0000000000000003e-28  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3952  DNA binding domain-containing protein  36.87 
 
 
317 aa  127  4.0000000000000003e-28  Xanthobacter autotrophicus Py2  Bacteria  normal  0.581977  normal 
 
 
-
 
NC_010003  Pmob_0374  molybdenum cofactor synthesis domain-containing protein  34.93 
 
 
632 aa  123  5e-27  Petrotoga mobilis SJ95  Bacteria  normal  0.858069  n/a   
 
 
-
 
NC_005957  BT9727_0190  molybdate-binding protein  33.99 
 
 
315 aa  121  1.9999999999999998e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0223  molybdopterin biosynthesis protein, putative  33.99 
 
 
315 aa  120  3e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1772  molybdenum cofactor synthesis domain protein  35.96 
 
 
649 aa  120  3.9999999999999996e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1158  DNA binding domain protein, excisionase family  34.15 
 
 
320 aa  120  3.9999999999999996e-26  Sebaldella termitidis ATCC 33386  Bacteria  unclonable  0.000000000597249  n/a   
 
 
-
 
NC_011658  BCAH187_A0246  putative molybdopterin biosynthesis protein  33.99 
 
 
306 aa  120  4.9999999999999996e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0229  putative molybdopterin biosynthesis protein  33.99 
 
 
306 aa  119  7.999999999999999e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0920  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  33.33 
 
 
644 aa  119  9e-26  Ammonifex degensii KC4  Bacteria  normal  0.0353995  n/a   
 
 
-
 
NC_005945  BAS0204  molybdopterin biosynthesis protein  33.67 
 
 
306 aa  118  9.999999999999999e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0205  molybdopterin biosynthesis protein  33.67 
 
 
306 aa  118  9.999999999999999e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0222  putative molybdopterin biosynthesis protein  33.67 
 
 
306 aa  118  9.999999999999999e-26  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011729  PCC7424_0346  transcriptional regulator of molybdate metabolism, XRE family  34.78 
 
 
377 aa  118  1.9999999999999998e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009253  Dred_2878  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  34.65 
 
 
644 aa  118  1.9999999999999998e-25  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5098  periplasmic molybdate-binding protein  33.5 
 
 
306 aa  117  3e-25  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK0194  molybdate-binding protein  33 
 
 
315 aa  116  5e-25  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1676  molybdenum cofactor synthesis domain protein  32.35 
 
 
633 aa  115  1.0000000000000001e-24  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0187  DNA binding domain-containing protein  33 
 
 
306 aa  115  2.0000000000000002e-24  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0201  DNA binding domain-containing protein  32.16 
 
 
305 aa  114  3e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_1821  putative molybdate-binding protein  32.02 
 
 
294 aa  113  7.000000000000001e-24  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0801  molybdenum cofactor biosynthesis protein  37.44 
 
 
639 aa  112  1.0000000000000001e-23  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009954  Cmaq_0083  molybdenum cofactor synthesis domain-containing protein  31.82 
 
 
655 aa  112  1.0000000000000001e-23  Caldivirga maquilingensis IC-167  Archaea  normal  0.536917  normal  0.152284 
 
 
-
 
NC_012793  GWCH70_1737  DNA binding domain protein, excisionase family  34 
 
 
315 aa  111  2.0000000000000002e-23  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4042  molybdate metabolism transcriptional regulator  32.84 
 
 
376 aa  110  3e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  0.805509  normal  0.419577 
 
 
-
 
NC_008346  Swol_1557  molybdate-binding protein  36.18 
 
 
317 aa  110  3e-23  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0881  molybdenum cofactor synthesis domain protein  42.03 
 
 
624 aa  110  5e-23  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.542033  n/a   
 
 
-
 
NC_013216  Dtox_0019  DNA binding domain protein, excisionase family  31.34 
 
 
326 aa  110  6e-23  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_3707  molybdate metabolism transcriptional regulator  31.96 
 
 
374 aa  103  4e-21  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.487138  normal 
 
 
-
 
NC_007796  Mhun_0664  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  32.02 
 
 
621 aa  101  3e-20  Methanospirillum hungatei JF-1  Archaea  normal  0.509419  normal 
 
 
-
 
NC_009943  Dole_0369  DNA binding domain-containing protein  31.47 
 
 
308 aa  99.8  6e-20  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.0000403691  n/a   
 
 
-
 
NC_011832  Mpal_0154  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  32.24 
 
 
627 aa  99.8  8e-20  Methanosphaerula palustris E1-9c  Archaea  normal  normal  0.0854923 
 
 
-
 
NC_007498  Pcar_0674  molybdate-binding domain-containing protein  31.47 
 
 
304 aa  96.7  6e-19  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  1.95042e-17  n/a   
 
 
-
 
NC_011883  Ddes_2050  MoeA domain protein domain I and II  34.33 
 
 
662 aa  94.4  3e-18  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009051  Memar_0405  putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein  31.62 
 
 
636 aa  92.8  1e-17  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
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