47 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Fjoh_0032  CDS  NC_009441  38597  40375  1779  TPR repeat-containing protein  YP_001192389  decreased coverage  0.00127267  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_0155  CDS  NC_009441  161333  162475  1143  Zn-dependent hydrolase of the beta-lactamase fold-like protein  YP_001192512  decreased coverage  0.00273299  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_0156  CDS  NC_009441  162482  163282  801  helix-turn-helix domain-containing protein  YP_001192513  decreased coverage  0.00245012  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_0316  CDS  NC_009441  337596  338441  846  hypothetical protein  YP_001192671  decreased coverage  0.0097325  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_0341  CDS  NC_009441  361634  362668  1035  glycosyl transferase, group 1  YP_001192696  decreased coverage  0.000281472  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_0619  CDS  NC_009441  681712  682899  1188  hypothetical protein  YP_001192973  decreased coverage  0.00814787  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_0679  CDS  NC_009441  745587  746747  1161  hypothetical protein  YP_001193033  decreased coverage  6.56634e-10  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_0680  CDS  NC_009441  747102  747473  372  hypothetical protein  YP_001193034  decreased coverage  2.76062e-11  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_0898  CDS  NC_009441  1013729  1015081  1353  ankyrin  YP_001193251  decreased coverage  2.05657e-05  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_1405  CDS  NC_009441  1604435  1607416  2982  TonB-dependent receptor, plug  YP_001193756  decreased coverage  8.55387e-06  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_1608  CDS  NC_009441  1856220  1858283  2064  peptidyl-dipeptidase Dcp  YP_001193959  decreased coverage  0.000301747  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2191  CDS  NC_009441  2646790  2647722  933  peptidyl-prolyl cis-trans isomerase, cyclophilin type  YP_001194538  decreased coverage  0.00827429  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2192  CDS  NC_009441  2647824  2648132  309  hypothetical protein  YP_001194539  decreased coverage  0.00644879  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2260  CDS  NC_009441  2724831  2725310  480  hypothetical protein  YP_001194607  decreased coverage  0.00499879  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2395  CDS  NC_009441  2869557  2870189  633  hypothetical protein  YP_001194741  decreased coverage  0.000537312  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2396  CDS  NC_009441  2870198  2870692  495  ECF subfamily RNA polymerase sigma-24 factor  YP_001194742  decreased coverage  0.000155393  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2397  CDS  NC_009441  2870834  2871895  1062  hypothetical protein  YP_001194743  decreased coverage  0.00236791  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2438  CDS  NC_009441  2923793  2924449  657  DNA-(apurinic or apyrimidinic site) lyase  YP_001194784  decreased coverage  0.00334229  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2439  CDS  NC_009441  2924517  2925071  555  hypothetical protein  YP_001194785  decreased coverage  0.000494698  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2487  CDS  NC_009441  2975724  2976038  315  plasmid stabilization system protein  YP_001194833  decreased coverage  2.34328e-09  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2488  CDS  NC_009441  2976023  2976253  231  hypothetical protein  YP_001194834  decreased coverage  1.3298e-09  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2666  CDS  NC_009441  3169433  3171112  1680  hypothetical protein  YP_001195008  decreased coverage  0.00626292  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2772  CDS  NC_009441  3306058  3306426  369  CopY family transcriptional regulator  YP_001195113  decreased coverage  0.00766879  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2826  CDS  NC_009441  3361493  3362656  1164  monooxygenase, FAD-binding  YP_001195167  decreased coverage  0.00129396  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2827  CDS  NC_009441  3362809  3363183  375  hypothetical protein  YP_001195168  decreased coverage  0.000159282  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2828  CDS  NC_009441  3363190  3363657  468  activator of Hsp90 ATPase 1 family protein  YP_001195169  decreased coverage  0.000180881  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2888  CDS  NC_009441  3426604  3428631  2028  hypothetical protein  YP_001195228  decreased coverage  0.00132631  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2913  CDS  NC_009441  3454929  3457094  2166  DNA mismatch repair protein MutS domain-containing protein  YP_001195253  decreased coverage  0.00104872  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_2996  CDS  NC_009441  3542235  3543365  1131  chromate transporter  YP_001195336  decreased coverage  0.000942409  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_3069    NC_009441  3634733  3637964  3232      decreased coverage  0.000491147  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_3070  CDS  NC_009441  3637951  3639198  1248  Outer membrane protein-like protein  YP_001195406  decreased coverage  0.000236485  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_3127  CDS  NC_009441  3712984  3715995  3012  TonB-dependent receptor  YP_001195463  decreased coverage  0.00375079  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_3301  CDS  NC_009441  3943964  3944854  891  hypothetical protein  YP_001195636  decreased coverage  0.00885964  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_3403  CDS  NC_009441  4066772  4068181  1410  aspartate ammonia-lyase  YP_001195736  decreased coverage  0.00437169  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_3428  CDS  NC_009441  4095178  4096248  1071  peptidase M20  YP_001195761  decreased coverage  0.00953913  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_3461  CDS  NC_009441  4126897  4128483  1587  integral membrane sensor signal transduction histidine kinase  YP_001195794  decreased coverage  0.0023015  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_3606  CDS  NC_009441  4302870  4304042  1173  hypothetical protein  YP_001195939  decreased coverage  0.000438328  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_3692  CDS  NC_009441  4384962  4385525  564  hypothetical protein  YP_001196025  decreased coverage  0.00870459  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_4023  CDS  NC_009441  4802162  4802692  531  hypothetical protein  YP_001196352  decreased coverage  0.0068121  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_4093  CDS  NC_009441  4903714  4905426  1713  hypothetical protein  YP_001196420  decreased coverage  0.00468753  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_4193  CDS  NC_009441  5034626  5038828  4203  histidine kinase  YP_001196520  decreased coverage  0.00660029  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_4351  CDS  NC_009441  5254544  5255833  1290  hypothetical protein  YP_001196677  decreased coverage  3.8301e-07  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_4370  CDS  NC_009441  5273324  5274121  798  hypothetical protein  YP_001196696  decreased coverage  0.00797888  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_4371  CDS  NC_009441  5274125  5274637  513  hypothetical protein  YP_001196697  decreased coverage  0.00229878  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_4654  CDS  NC_009441  5629994  5630914  921  hypothetical protein  YP_001196972  decreased coverage  0.00254851  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_4655  CDS  NC_009441  5630898  5632832  1935  SufS subfamily cysteine desulfurase  YP_001196973  decreased coverage  0.00370812  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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Fjoh_4870  CDS  NC_009441  5893360  5893671  312  rhodanese domain-containing protein  YP_001197188  decreased coverage  0.00622661  n/a    Flavobacterium johnsoniae UW101  Bacteria 
 
 
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