19 homologs were found in PanDaTox collection
for query gene Rru_A1839 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007643  Rru_A1839  TRAP-type C4-dicarboxylate transport system periplasmic component-like  100 
 
 		 353 aa  678    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.271591  n/a   
 
 
-
 
NC_009621  Smed_5134  TRAP dicarboxylate transporter- DctP subunit  28.92 
 
 		 334 aa  119  9.999999999999999e-26  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.67454 
 
 
-
 
NC_008709  Ping_3675  TRAP dicarboxylate transporter- DctP subunit  23.67 
 
 		 330 aa  105  1e-21  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008340  Mlg_2788  TRAP dicarboxylate transporter- DctP subunit  25.35 
 
 		 342 aa  97.8  3e-19  Alkalilimnicola ehrlichii MLHE-1  Bacteria  unclonable  0.000000133752  normal  1 
 
 
-
 
NC_009429  Rsph17025_3570  hypothetical protein  25 
 
 		 326 aa  94.7  2e-18  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  0.611494 
 
 
-
 
NC_009952  Dshi_3003  TRAP transporter - DctP subunit  26.71 
 
 		 327 aa  90.1  5e-17  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.613521  normal  1 
 
 
-
 
NC_007908  Rfer_1840  TRAP dicarboxylate transporter- DctP subunit  21.02 
 
 		 338 aa  62  0.00000002  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.000139168  n/a   
 
 
-
 
NC_009485  BBta_4052  putative TRAP-type C4-dicarboxylate transport system  25.36 
 
 		 340 aa  56.2  0.0000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.440792  normal  0.274603 
 
 
-
 
NC_007298  Daro_4023  TRAP dicarboxylate transporter- DctP subunit  23.72 
 
 		 341 aa  55.5  0.000002  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.000715692  normal  1 
 
 
-
 
NC_007925  RPC_2529  twin-arginine translocation pathway signal  22.82 
 
 		 338 aa  55.1  0.000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.159803 
 
 
-
 
NC_007963  Csal_1026  TRAP dicarboxylate transporter- DctP subunit  24.11 
 
 		 329 aa  53.1  0.000006  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.608774  n/a   
 
 
-
 
NC_011004  Rpal_2813  TRAP dicarboxylate transporter- DctP subunit  21.54 
 
 		 339 aa  50.8  0.00004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.544933  n/a   
 
 
-
 
NC_008709  Ping_3546  TRAP dicarboxylate transporter- DctP subunit  24.12 
 
 		 323 aa  50.1  0.00006  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008309  HS_0022  dicarboxylate-binding protein  28.97 
 
 		 327 aa  48.9  0.0001  Haemophilus somnus 129PT  Bacteria  decreased coverage  0.00664942  n/a   
 
 
-
 
NC_003295  RSc2166  putative signal peptide protein  25.17 
 
 		 339 aa  48.1  0.0002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.362822  normal  1 
 
 
-
 
NC_011894  Mnod_7255  TRAP dicarboxylate transporter- DctP subunit  20.97 
 
 		 338 aa  47.8  0.0003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.264447  n/a   
 
 
-
 
NC_013946  Mrub_2077  TRAP dicarboxylate transporter subunit DctP  24.72 
 
 		 322 aa  46.2  0.0009  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  0.18454 
 
 
-
 
NC_009654  Mmwyl1_2451  TRAP dicarboxylate transporter- DctP subunit  24 
 
 		 344 aa  45.1  0.002  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_6030  TRAP dicarboxylate transporter- DctP subunit  21.03 
 
 		 338 aa  45.1  0.002  Methylobacterium sp. 4-46  Bacteria  normal  0.122979  normal  0.224939 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>