| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_1840 |
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| Symbol | |
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| ID | 3963015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 1978549 |
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| End bp | 1979565 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637916660 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_523097 |
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| Protein GI | 89900626 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000139168 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAGAC GTCAATTACT TCAGTCCATG GGCGGCCTTG CGGCCAGCAC AATGCCCTTC
TCGTTGGCTT TTGCGCAAAC CTCGGCGCTC AAGATTTCGC ATCAATTTCC GGGTGGCACG
ATCAAAGAAG GTGACTTCCG TGATCGCTTG GTGCGCAACT TTGCCGCTGA AGTTGAAAAA
CGCAGCAAAG GGGCCATGAA ATTCGAGATT TACCCGGGCT CTTCATTGAT GAAGACCAAC
GCCCAGTTCT CATCCATGCG CAAAGGCGCG CTGGATATGG CACTGATACC CTTGTCTTAC
GCCGGCGGCG AAGTACCAGA GCTCAACATT GGCCTGATGC CCGGCTTGGT CGTGTCTTAT
GAGCAAGCGT ATAGCTGGAA AACCAAGCCG GTCGGCATAG AACTCACCCG TGTGCTGCAA
GAAAAAGGCA TTGTGCTGAT CAGCTGGATT TGGCAAGCCG GTGGTGTGGC CTCGCGCGGC
AAGCCGGTGG TGGAGCCTGA AGATGCCAAG GGTATGAAGA TCCGTGGTGG CTCGCGTGAG
ATGGACATGA TTCTTAAAGA TGCAGGTGCT GCTGTCGTCT CGCTTCCCTC CAATGAAATC
TATGCCGCCA TGCAGACCGG CGCCATGGAT GCGGCCATGA CTTCATCCAC CTCATTCATT
TCATTTCGTC TGGAAGAGGT GGCCAAGGCG TTGACCACCG GTCGCACGGG GGCTTATTGG
TTTATGTTTG AGCCGCTGAT GATGTCAAAA GCCATCTTCG ACAAATTGCC CAAGGACCAG
CGTGACATGC TCATGACCGT GGGTGCCGAG ATGGAGAAAT TTGCTCTGGA AGCAGCCAAG
AAGGACGACA TTGATGTGGC GGCTGTGTAC CAAAAGGCCG GTGCCAAAGT GGTCGATTTG
TCTGATGGAA CCATCAAAAA GTGGCAAGAC ATTGCGCGCA AAACCGCCTG GAAGGACTAC
GGAGCCAAAA ATGAGGGCTG CGCCAAGTTG CTGGCTTTAG CGCAGCAGAC GTTGTGA
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| Protein sequence | MQRRQLLQSM GGLAASTMPF SLAFAQTSAL KISHQFPGGT IKEGDFRDRL VRNFAAEVEK
RSKGAMKFEI YPGSSLMKTN AQFSSMRKGA LDMALIPLSY AGGEVPELNI GLMPGLVVSY
EQAYSWKTKP VGIELTRVLQ EKGIVLISWI WQAGGVASRG KPVVEPEDAK GMKIRGGSRE
MDMILKDAGA AVVSLPSNEI YAAMQTGAMD AAMTSSTSFI SFRLEEVAKA LTTGRTGAYW
FMFEPLMMSK AIFDKLPKDQ RDMLMTVGAE MEKFALEAAK KDDIDVAAVY QKAGAKVVDL
SDGTIKKWQD IARKTAWKDY GAKNEGCAKL LALAQQTL
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