17 homologs were found in PanDaTox collection
for query gene MADE_01541 on replicon NC_011138
Organism: Alteromonas macleodii 'Deep ecotype'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011138  MADE_01541  Stress responsive alpha-beta barrel  100 
 
 
97 aa  202  1e-51  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1144  stress responsive alpha-beta barrel  62.5 
 
 
157 aa  134  6.0000000000000005e-31  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.17953  n/a   
 
 
-
 
NC_013037  Dfer_1578  Stress responsive alpha-beta barrel domain protein  58.33 
 
 
135 aa  123  7e-28  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.247045  normal 
 
 
-
 
NC_010571  Oter_1073  stress responsive alpha-beta barrel domain-containing protein  56.32 
 
 
142 aa  118  3e-26  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1763  transcription-repair coupling factor  51.04 
 
 
108 aa  107  8.000000000000001e-23  Saccharophagus degradans 2-40  Bacteria  normal  0.356996  normal 
 
 
-
 
NC_013132  Cpin_5601  Stress responsive alpha-beta barrel domain protein  54.26 
 
 
140 aa  104  4e-22  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00880614  normal 
 
 
-
 
NC_009511  Swit_1629  stress responsive alpha-beta barrel domain-containing protein  50 
 
 
135 aa  100  5e-21  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_3402  Stress responsive alpha-beta barrel domain protein  45.65 
 
 
99 aa  93.2  1e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.276263  normal 
 
 
-
 
NC_013730  Slin_0488  Stress responsive alpha-beta barrel domain protein  45.26 
 
 
133 aa  91.7  3e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.152282 
 
 
-
 
NC_013730  Slin_4395  Stress responsive alpha-beta barrel domain protein  45.26 
 
 
99 aa  91.3  4e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_0827  Stress responsive alpha-beta barrel domain protein  42.27 
 
 
100 aa  77.4  0.00000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_4112  stress responsive alpha-beta barrel domain-containing protein  36.56 
 
 
99 aa  75.1  0.0000000000003  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2435  Stress responsive alpha-beta barrel domain protein  38.71 
 
 
98 aa  73.6  0.0000000000008  Pedobacter heparinus DSM 2366  Bacteria  normal  0.23719  normal 
 
 
-
 
NC_008255  CHU_1665  hypothetical protein  32.26 
 
 
98 aa  68.6  0.00000000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0308799  normal  0.297476 
 
 
-
 
NC_013037  Dfer_5679  stress responsive alpha-beta barrel domain- containing protein  31.58 
 
 
137 aa  63.9  0.0000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.281703  normal 
 
 
-
 
NC_002977  MCA0759  hypothetical protein  31.91 
 
 
101 aa  51.6  0.000004  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_3871  Stress responsive alpha-beta barrel domain protein  30.85 
 
 
103 aa  45.1  0.0003  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.955674  n/a   
 
 
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