13 homologs were found in PanDaTox collection
for query gene Cpin_2560 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013132  Cpin_2560  transcriptional regulator, XRE family  100 
 
 		 73 aa  148  3e-35  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008255  CHU_2935  hypothetical protein  44.93 
 
 		 70 aa  69.7  0.00000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  1  normal  0.111213 
 
 
-
 
NC_002950  PG1203  transcriptional regulator, putative  54.24 
 
 		 69 aa  69.3  0.00000000002  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.48575 
 
 
-
 
NC_009441  Fjoh_4109  XRE family transcriptional regulator  50 
 
 		 71 aa  60.5  0.000000009  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0516586  n/a   
 
 
-
 
NC_002950  PG0543  transcriptional regulator, putative  42.86 
 
 		 67 aa  59.3  0.00000002  Porphyromonas gingivalis W83  Bacteria  n/a    normal  1 
 
 
-
 
NC_013037  Dfer_1362  transcriptional regulator, XRE family  39.39 
 
 		 69 aa  49.3  0.00002  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.120479 
 
 
-
 
NC_011772  BCG9842_B1349  immunity repressor protein  38.6 
 
 		 144 aa  44.7  0.0004  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009441  Fjoh_4372  helix-turn-helix domain-containing protein  34.92 
 
 		 87 aa  42.7  0.001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0153789  n/a   
 
 
-
 
NC_014165  Tbis_1864  XRE family transcriptional regulator  33.33 
 
 		 490 aa  42  0.003  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013161  Cyan8802_2104  transcriptional regulator, XRE family  29.09 
 
 		 128 aa  41.2  0.005  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  0.946705 
 
 
-
 
NC_013161  Cyan8802_4276  transcriptional regulator, XRE family  29.09 
 
 		 128 aa  41.2  0.005  Cyanothece sp. PCC 8802  Bacteria  normal  0.204004  normal  0.368569 
 
 
-
 
NC_013205  Aaci_0465  transcriptional regulator, XRE family  34.92 
 
 		 163 aa  40.8  0.006  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.00289124  n/a   
 
 
-
 
NC_011658  BCAH187_A2209  putative DNA-binding protein  38.6 
 
 		 117 aa  40.8  0.007  Bacillus cereus AH187  Bacteria  normal  0.706329  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>