12 homologs were found in PanDaTox collection
for query gene Ssed_2396 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_2396  hypothetical protein  100 
 
 
49 aa  94.4  5e-19  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1502  hypothetical protein  66.67 
 
 
292 aa  65.9  0.0000000002  Shewanella baltica OS185  Bacteria  normal  0.207874  n/a   
 
 
-
 
NC_004347  SO_1692  hypothetical protein  67.5 
 
 
301 aa  60.1  0.00000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2584  hypothetical protein  80.65 
 
 
298 aa  55.5  0.0000002  Shewanella sp. MR-4  Bacteria  normal  normal  0.0865968 
 
 
-
 
NC_008577  Shewana3_2759  hypothetical protein  80.65 
 
 
298 aa  55.5  0.0000002  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0453  protein of unknown function DUF6 transmembrane  70 
 
 
288 aa  55.5  0.0000003  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.000315888  n/a   
 
 
-
 
NC_009052  Sbal_1509  hypothetical protein  68.29 
 
 
82 aa  54.7  0.0000004  Shewanella baltica OS155  Bacteria  normal  0.585476  n/a   
 
 
-
 
NC_009997  Sbal195_1538  hypothetical protein  68.29 
 
 
292 aa  54.3  0.0000006  Shewanella baltica OS195  Bacteria  normal  0.746506  normal 
 
 
-
 
NC_008322  Shewmr7_2651  hypothetical protein  77.42 
 
 
298 aa  53.9  0.0000008  Shewanella sp. MR-7  Bacteria  normal  0.574566  normal 
 
 
-
 
NC_008700  Sama_2916  DMT family permease  53.33 
 
 
297 aa  45.8  0.0002  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.261438 
 
 
-
 
NC_009092  Shew_2194  hypothetical protein  56.25 
 
 
305 aa  45.1  0.0004  Shewanella loihica PV-4  Bacteria  normal  hitchhiker  0.00374881 
 
 
-
 
NC_010718  Nther_2824  protein of unknown function DUF6 transmembrane  42.11 
 
 
278 aa  41.6  0.003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>