| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2916 |
|---|
| Symbol | |
|---|
| ID | 4605163 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 3465462 |
|---|
| End bp | 3466355 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639782327 |
|---|
| Product | DMT family permease |
|---|
| Protein accession | YP_928788 |
|---|
| Protein GI | 119776048 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.261438 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGCG GTTTTTATTT GTTGGCAGCC CTGTCAGCCA TTCTCATGGG TACCATTGGC
ATCATTGCCC GCTTTGGCGA ACTGGATGCC GCCATGCTGA CCTTTTACCG GCTGGGGCTG
GGCGCCCTTA TCCTGATGCT GTTTTTGCTG TTTCGCCGCG AAACGGCAAG GCTATGGGTA
AAACCGCACT GGGGCACAGT GGCCGGTGGC GTATTGCTGG CGACCTTTAT TCTGTGTTTT
CTCAAAGCCA TAGAAACCAT TCCCATGTCC CTCGCCATTA TGTTGGTGTA TCTTGCTCCG
GCAGTGGCTG CCATAGGCGC GCATTTTTTG TTTGGGGAGC GTTTGGGGGC AGCGGCTTTT
GGTCTGATTT TGCTGGCCTT TTTCGGTTTT GCCATGCTTC AGGAGTTCAA CTTGGATATG
GCTGGCGCCG AAGCCCTCGG CATGAGCTAT GCGCTGGGCT GTTTGCTGGC CTACACCGCC
TTTATCCTCA TCAATAAAAA AATTCCGCCC GCCAGCGATC CCTACGCCAA AACCTGGGTA
CAGCTGGCCG TGGGTGCCCT GGTGACACTG CCCATGGTTT GGGGCGACCC CTTGCCCAAC
GCCAGTGAAT GGTTCTGGCT GATGATTGCC GCCGTCTTCC CCGGCTTTTT AGCCATCCTC
TTTGCGGTAA AATCCATTAC CGCGCTGCCG GCCAAGATGT TCGGCACCCT GGCCTACCTT
GAACCTCTGG TCGTGGTATT AACCGGTTAT CTGCTGTTTA ACGAGCCCAT GTCAGCCCTT
AAATGGGGTG GCTGCGCCCT TATCCTGCTG TCGGGTATTG CCCAGGTGCA ACTGGCAAAT
GCCGCCAACG CCCGCGCTCA GGCTGGCAAT GGCAGGCCCC TTAAGGTAAG TTAA
|
|---|
| Protein sequence | MQSGFYLLAA LSAILMGTIG IIARFGELDA AMLTFYRLGL GALILMLFLL FRRETARLWV
KPHWGTVAGG VLLATFILCF LKAIETIPMS LAIMLVYLAP AVAAIGAHFL FGERLGAAAF
GLILLAFFGF AMLQEFNLDM AGAEALGMSY ALGCLLAYTA FILINKKIPP ASDPYAKTWV
QLAVGALVTL PMVWGDPLPN ASEWFWLMIA AVFPGFLAIL FAVKSITALP AKMFGTLAYL
EPLVVVLTGY LLFNEPMSAL KWGGCALILL SGIAQVQLAN AANARAQAGN GRPLKVS
|
|---|
| |