10 homologs were found in PanDaTox collection
for query gene Ssed_0260 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009831  Ssed_0260  hypothetical protein  100 
 
 		 237 aa  484  1e-136  Shewanella sediminis HAW-EB3  Bacteria  normal  0.360055  normal  0.584816 
 
 
-
 
NC_009092  Shew_3582  hypothetical protein  50.83 
 
 		 236 aa  237  1e-61  Shewanella loihica PV-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_2266  hypothetical protein  46.75 
 
 		 236 aa  212  4.9999999999999996e-54  Shewanella woodyi ATCC 51908  Bacteria  normal  0.116308  normal  1 
 
 
-
 
NC_009901  Spea_3949  type IV pilus assembly PilZ  44.59 
 
 		 222 aa  204  1e-51  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_0292  hypothetical protein  30.83 
 
 		 225 aa  53.9  0.000002  Colwellia psychrerythraea 34H  Bacteria  unclonable  0.000146713  n/a   
 
 
-
 
NC_011138  MADE_01915  hypothetical protein  26.05 
 
 		 227 aa  50.4  0.00002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.429249  n/a   
 
 
-
 
NC_008228  Patl_2388  type IV pilus assembly PilZ  25.23 
 
 		 208 aa  47.8  0.0001  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_007954  Sden_3596  type IV pilus assembly PilZ  26.09 
 
 		 220 aa  46.6  0.0004  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_1127  type IV pilus assembly PilZ  27.4 
 
 		 214 aa  44.7  0.001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011312  VSAL_I2294  putative type IV pilus assembly (PilZ) protein  24.69 
 
 		 224 aa  41.6  0.01  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
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