Gene Patl_2388 details

Gene Information

• Locus tag: Patl_2388
• ID: 4174136
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 2902987
• End bp: 2903613
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638055399
• Product: type IV pilus assembly PilZ
• Protein accession: YP_661958
• Protein GI: 109898703

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGACCGG GCATGATTGT AGACTTGCAA ATTCACTCGC CAACATTAAA AAGACGAGTA 
AAAACGGAAT TCGTAGGCAT AGACGGGAGC CGAAATCTGA TCTTCCGATT CCCTGATGAG 
AACAAGTGGG CAGGTCTTGG TGGCGCAATT TACATGAATA ATACTATGAT TGTGCGCTGC 
ATTTTAGAAG ATGAAACGGG AGAGATAGTC GCATTCAAAG TCAAAATAAT CATAGTGATC 
ACCCGGCCAT CTAAGTTGGT ATTTACCTCA TTCCCGGAAA GTATTCAAAG TCACGGTTTA 
CGCGCTGAAC AGCGAGCCCA GACACGCATC GCTGCGTTGT TAATTGATAG CCAAGAGCGC 
AGCCACATAG TACCTTGTTT GGTGCGCGAT ATTTCGAATC AGGGGTGTAT GATCAGTATT 
GGGCGCGACG CAAAAGGGGT AAAGCCAACT GTGGATCAGG AGCTTGAGTT ACTGATACCA 
AATTCAGAGG GGGATGACAT CAGTTTGTCC GGTCATGTGC GAAATAAGAA AGAGGATGAT 
ACTCGGCATT ATTTCGGGAT CCAATTTTGC GATGATGAAA ATGACGTGGC CAAGCTGCTG 
AGCCAACTAT TAATCAATAC CGGATAG 

 

Protein sequence

MRPGMIVDLQ IHSPTLKRRV KTEFVGIDGS RNLIFRFPDE NKWAGLGGAI YMNNTMIVRC 
ILEDETGEIV AFKVKIIIVI TRPSKLVFTS FPESIQSHGL RAEQRAQTRI AALLIDSQER 
SHIVPCLVRD ISNQGCMISI GRDAKGVKPT VDQELELLIP NSEGDDISLS GHVRNKKEDD 
TRHYFGIQFC DDENDVAKLL SQLLINTG