18 homologs were found in PanDaTox collection
for query gene RoseRS_3107 on replicon NC_009523
Organism: Roseiflexus sp. RS-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009523  RoseRS_3107  FmdB family regulatory protein  100 
 
 
95 aa  192  1e-48  Roseiflexus sp. RS-1  Bacteria  normal  0.485434  normal  0.294544 
 
 
-
 
NC_009767  Rcas_2948  FmdB family regulatory protein  86.25 
 
 
80 aa  120  7e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.827957  hitchhiker  0.00103646 
 
 
-
 
NC_011831  Cagg_0322  regulatory protein, FmdB family  63.75 
 
 
78 aa  108  3e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.71311  normal  0.241427 
 
 
-
 
NC_009972  Haur_2075  hypothetical protein  45.05 
 
 
115 aa  77.8  0.00000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0405722  n/a   
 
 
-
 
NC_008148  Rxyl_2441  FmdB transcriptional regulator  52.17 
 
 
77 aa  47.4  0.00006  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_1245  hypothetical protein  38.46 
 
 
82 aa  46.6  0.0001  Dehalococcoides sp. VS  Bacteria  normal  0.265358  n/a   
 
 
-
 
NC_014210  Ndas_3419  regulatory protein, FmdB family  43.14 
 
 
77 aa  44.3  0.0006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_1269  FmdB family regulatory protein  37.5 
 
 
71 aa  43.9  0.0007  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3683  regulatory protein, FmdB family  34.48 
 
 
105 aa  43.9  0.0007  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET1468  hypothetical protein  37.5 
 
 
71 aa  43.9  0.0007  Dehalococcoides ethenogenes 195  Bacteria  normal  0.337511  n/a   
 
 
-
 
NC_010172  Mext_3374  FmdB family regulatory protein  34.48 
 
 
105 aa  43.9  0.0007  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_4083  FmdB family regulatory protein  51.52 
 
 
75 aa  42.4  0.002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.382844 
 
 
-
 
NC_009485  BBta_0660  putative formamidase regulatory protein FmdB  32.58 
 
 
113 aa  42.7  0.002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.5535  normal  0.31375 
 
 
-
 
NC_009523  RoseRS_0880  FmdB family regulatory protein  51.52 
 
 
78 aa  41.6  0.003  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0842902 
 
 
-
 
NC_011831  Cagg_2774  regulatory protein, FmdB family  36.49 
 
 
78 aa  42  0.003  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0665  FmdB family regulatory protein  32.43 
 
 
128 aa  42  0.003  Dehalococcoides sp. BAV1  Bacteria  unclonable  0.000000000563996  n/a   
 
 
-
 
NC_012791  Vapar_3139  regulatory protein, FmdB family  32.99 
 
 
115 aa  40.4  0.008  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_4072  regulatory protein, putative  32.61 
 
 
115 aa  40.4  0.009  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.443416  n/a   
 
 
-
 
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