29 homologs were found in PanDaTox collection
for query gene Rmet_5749 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007974  Rmet_5749  putative PadR-like family transcriptional regulator  100 
 
 
127 aa  259  1e-68  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5527  PadR family transcriptional regulator  88.78 
 
 
108 aa  174  3e-43  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B3645  PadR family transcriptional regulator  34.52 
 
 
97 aa  60.1  0.000000009  Ralstonia eutropha JMP134  Bacteria  normal  0.168614  n/a   
 
 
-
 
NC_007974  Rmet_3965  putative transcriptional regulator  37.5 
 
 
113 aa  53.9  0.0000007  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.0238109 
 
 
-
 
NC_005957  BT9727_2202  PadR family transcriptional regulator  27.55 
 
 
102 aa  51.2  0.000004  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1435  PadR family transcriptional regulator  35.87 
 
 
128 aa  50.8  0.000006  Mycobacterium sp. JLS  Bacteria  normal  normal  0.666797 
 
 
-
 
NC_009439  Pmen_2227  PadR family transcriptional regulator  30.85 
 
 
101 aa  48.1  0.00003  Pseudomonas mendocina ymp  Bacteria  normal  0.42968  normal 
 
 
-
 
NC_010424  Daud_0613  PadR-like family transcriptional regulator  30.68 
 
 
101 aa  47.8  0.00005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_710  transcriptional regulator, PadR-type  38.64 
 
 
99 aa  47.4  0.00007  Dehalococcoides sp. VS  Bacteria  normal  0.0242268  n/a   
 
 
-
 
NC_009671  Oant_4665  PadR-like family transcriptional regulator  31.46 
 
 
100 aa  45.8  0.0002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009670  Oant_4772  PadR-like family transcriptional regulator  31.46 
 
 
100 aa  45.8  0.0002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0730  PadR family transcriptional regulator  38.64 
 
 
99 aa  45.4  0.0002  Dehalococcoides sp. BAV1  Bacteria  normal  0.118827  n/a   
 
 
-
 
NC_011884  Cyan7425_2857  transcriptional regulator, PadR-like family  29.79 
 
 
100 aa  46.2  0.0002  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.748004 
 
 
-
 
NC_011894  Mnod_3107  transcriptional regulator, PadR-like family  36.14 
 
 
103 aa  46.2  0.0002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1225  PadR family transcriptional regulator  28.42 
 
 
100 aa  45.1  0.0003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_1141  transcriptional regulator, PadR family  24.21 
 
 
102 aa  43.9  0.0007  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.386385 
 
 
-
 
NC_009565  TBFG_13523  hypothetical protein  32.61 
 
 
107 aa  41.6  0.004  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.00194413 
 
 
-
 
NC_009674  Bcer98_1041  PadR-like family transcriptional regulator  40 
 
 
150 aa  41.6  0.004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.812068  n/a   
 
 
-
 
NC_003909  BCE_1427  PadR family transcriptional regulator  41.54 
 
 
150 aa  41.6  0.004  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0475  transcriptional regulator, PadR family  34.67 
 
 
109 aa  41.2  0.006  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1229  PadR-like family transcriptional regulator  40 
 
 
150 aa  40.4  0.008  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1328  PadR family transcriptional regulator  40 
 
 
150 aa  40.4  0.008  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1468  transcriptional regulator, PadR family  40 
 
 
150 aa  40.4  0.008  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1403  transcriptional regulator, PadR family  40 
 
 
150 aa  40.4  0.008  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK1207  PadR family transcriptional regulator putative  40 
 
 
150 aa  40.4  0.008  Bacillus cereus E33L  Bacteria  normal  0.0174936  n/a   
 
 
-
 
NC_005957  BT9727_1205  PadR family transcriptional regulator putative  40 
 
 
150 aa  40.4  0.008  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1228  PadR family transcriptional regulator  40 
 
 
150 aa  40.4  0.008  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A1366  transcriptional regulator, PadR family  40 
 
 
150 aa  40.4  0.009  Bacillus cereus B4264  Bacteria  normal  0.261083  n/a   
 
 
-
 
NC_011772  BCG9842_B3978  transcriptional regulator, PadR family  40 
 
 
150 aa  40.4  0.009  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>