74 homologs were found in PanDaTox collection
for query gene RPB_1707 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007778  RPB_1707  5-carboxymethyl-2-hydroxymuconate isomerase  100 
 
 		 132 aa  268  1e-71  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.214837  normal  0.557794 
 
 
-
 
NC_011004  Rpal_4280  5-carboxymethyl-2-hydroxymuconate isomerase  87.12 
 
 		 132 aa  242  9.999999999999999e-64  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0353441  n/a   
 
 
-
 
NC_007958  RPD_3590  5-carboxymethyl-2-hydroxymuconate isomerase  87.12 
 
 		 132 aa  241  3e-63  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.421371  normal  0.741818 
 
 
-
 
NC_009485  BBta_2940  putative 5-carboxymethyl-2-hydroxymuconate isomerase, HpcD-like protein  74.24 
 
 		 132 aa  210  7e-54  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.731959  normal  1 
 
 
-
 
NC_007925  RPC_1694  5-carboxymethyl-2-hydroxymuconate isomerase  69.7 
 
 		 155 aa  202  1e-51  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004311  BRA1162  5-carboxymethyl-2-hydroxymuconate delta isomerase  43.2 
 
 		 130 aa  112  1.0000000000000001e-24  Brucella suis 1330  Bacteria  normal  0.837994  n/a   
 
 
-
 
NC_009504  BOV_A1065  5-carboxymethyl-2-hydroxymuconate delta isomerase  43.2 
 
 		 130 aa  112  2.0000000000000002e-24  Brucella ovis ATCC 25840  Bacteria  normal  0.0224972  n/a   
 
 
-
 
NC_011368  Rleg2_4440  5-carboxymethyl-2-hydroxymuconate isomerase  48.8 
 
 		 128 aa  111  3e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.436322 
 
 
-
 
NC_009654  Mmwyl1_3173  5-carboxymethyl-2-hydroxymuconate isomerase  37.6 
 
 		 126 aa  105  2e-22  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00000163889  normal  1 
 
 
-
 
NC_010676  Bphyt_5828  5-carboxymethyl-2-hydroxymuconate isomerase  41.35 
 
 		 133 aa  102  2e-21  Burkholderia phytofirmans PsJN  Bacteria  normal  0.374293  normal  0.270362 
 
 
-
 
NC_007952  Bxe_B2032  5-carboxymethyl-2-hydroxymuconate isomerase(HpcD)  39.42 
 
 		 137 aa  102  2e-21  Burkholderia xenovorans LB400  Bacteria  normal  0.488422  normal  0.194085 
 
 
-
 
NC_009656  PSPA7_0967  5-carboxymethyl-2-hydroxymuconate isomerase  37.6 
 
 		 130 aa  101  4e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_10610  5-carboxymethyl-2-hydroxymuconate isomerase  36.8 
 
 		 130 aa  99.8  1e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.650129  normal  1 
 
 
-
 
NC_008254  Meso_2508  5-carboxymethyl-2-hydroxymuconate isomerase  42.62 
 
 		 127 aa  99.4  2e-20  Chelativorans sp. BNC1  Bacteria  normal  0.260692  n/a   
 
 
-
 
NC_007802  Jann_3504  5-carboxymethyl-2-hydroxymuconate isomerase  43.2 
 
 		 129 aa  97.8  4e-20  Jannaschia sp. CCS1  Bacteria  normal  1  hitchhiker  0.000217132 
 
 
-
 
NC_008043  TM1040_3469  5-carboxymethyl-2-hydroxymuconate isomerase  41.6 
 
 		 131 aa  95.9  2e-19  Ruegeria sp. TM1040  Bacteria  normal  0.220005  normal  1 
 
 
-
 
NC_009832  Spro_0629  5-carboxymethyl-2-hydroxymuconate isomerase  36.72 
 
 		 128 aa  93.6  7e-19  Serratia proteamaculans 568  Bacteria  normal  0.701898  normal  1 
 
 
-
 
NC_009078  BURPS1106A_A0942  5-carboxymethyl-2-hydroxymuconate delta isomerase  36.59 
 
 		 130 aa  92.8  1e-18  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_008835  BMA10229_0104  5-carboxymethyl-2-hydroxymuconate delta isomerase  36.59 
 
 		 130 aa  92  2e-18  Burkholderia mallei NCTC 10229  Bacteria  normal  0.325695  n/a   
 
 
-
 
NC_006349  BMAA1136  5-carboxymethyl-2-hydroxymuconate delta isomerase  36.59 
 
 		 130 aa  92  2e-18  Burkholderia mallei ATCC 23344  Bacteria  normal  0.838487  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2268  5-carboxymethyl-2-hydroxymuconate delta isomerase  36.59 
 
 		 130 aa  92  2e-18  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_009079  BMA10247_A1509  5-carboxymethyl-2-hydroxymuconate delta isomerase  36.59 
 
 		 130 aa  92  2e-18  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0875183  n/a   
 
 
-
 
NC_009075  BURPS668_A1027  5-carboxymethyl-2-hydroxymuconate delta isomerase  36.59 
 
 		 130 aa  92  2e-18  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_007650  BTH_II1731  5-carboxymethyl-2-hydroxymuconate delta isomerase  35.77 
 
 		 130 aa  89.7  1e-17  Burkholderia thailandensis E264  Bacteria  normal  0.628874  n/a   
 
 
-
 
NC_008391  Bamb_3657  5-carboxymethyl-2-hydroxymuconate isomerase  34.96 
 
 		 130 aa  89  2e-17  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.480508 
 
 
-
 
NC_010552  BamMC406_4131  5-carboxymethyl-2-hydroxymuconate isomerase  34.15 
 
 		 130 aa  88.2  3e-17  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0956828  normal  1 
 
 
-
 
NC_009800  EcHS_A4581  5-carboxymethyl-2-hydroxymuconate delta isomerase  33.6 
 
 		 126 aa  87.8  5e-17  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_010658  SbBS512_E4887  5-carboxymethyl-2-hydroxymuconate delta isomerase  33.6 
 
 		 126 aa  87.8  5e-17  Shigella boydii CDC 3083-94  Bacteria  normal  1  n/a   
 
 
-
 
NC_007511  Bcep18194_B1779  5-carboxymethyl-2-hydroxymuconate isomerase  34.15 
 
 		 130 aa  86.7  9e-17  Burkholderia sp. 383  Bacteria  normal  1  normal  0.104013 
 
 
-
 
NC_013411  GYMC61_3108  5-carboxymethyl-2-hydroxymuconate isomerase  35.77 
 
 		 128 aa  86.7  1e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010465  YPK_2457  5-carboxymethyl-2-hydroxymuconate isomerase  32.8 
 
 		 132 aa  85.9  2e-16  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.557413  n/a   
 
 
-
 
NC_011083  SeHA_C1214  5-carboxymethyl-2-hydroxymuconate delta isomerase  32 
 
 		 126 aa  85.9  2e-16  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.171475  normal  1 
 
 
-
 
NC_009708  YpsIP31758_2361  5-carboxymethyl-2-hydroxymuconate delta isomerase  32.8 
 
 		 132 aa  85.9  2e-16  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.662974  n/a   
 
 
-
 
NC_010515  Bcenmc03_3282  5-carboxymethyl-2-hydroxymuconate isomerase  34.15 
 
 		 130 aa  85.9  2e-16  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0116683  normal  0.241616 
 
 
-
 
NC_010159  YpAngola_A1644  5-carboxymethyl-2-hydroxymuconate delta-isomerase  32.8 
 
 		 132 aa  85.9  2e-16  Yersinia pestis Angola  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011094  SeSA_A1168  5-carboxymethyl-2-hydroxymuconate delta isomerase  32 
 
 		 126 aa  85.9  2e-16  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.205401  normal  1 
 
 
-
 
NC_008543  Bcen2424_4235  5-carboxymethyl-2-hydroxymuconate isomerase  34.15 
 
 		 130 aa  85.9  2e-16  Burkholderia cenocepacia HI2424  Bacteria  normal  0.226004  normal  0.0771683 
 
 
-
 
NC_008061  Bcen_4131  5-carboxymethyl-2-hydroxymuconate isomerase  34.15 
 
 		 130 aa  85.9  2e-16  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0346405  n/a   
 
 
-
 
NC_011149  SeAg_B1063  5-carboxymethyl-2-hydroxymuconate delta isomerase  32 
 
 		 126 aa  85.1  3e-16  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_011205  SeD_A1179  5-carboxymethyl-2-hydroxymuconate delta isomerase  32 
 
 		 126 aa  85.1  3e-16  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.898893  normal  1 
 
 
-
 
CP001509  ECD_04227  5-carboxymethyl-2-hydroxymuconate delta-isomerase  32.8 
 
 		 126 aa  85.1  3e-16  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_010468  EcolC_3705  5-carboxymethyl-2-hydroxymuconate isomerase  32.8 
 
 		 126 aa  85.1  3e-16  Escherichia coli ATCC 8739  Bacteria  normal  1  normal  0.263188 
 
 
-
 
NC_012892  B21_04193  hypothetical protein  32.8 
 
 		 126 aa  85.1  3e-16  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_010086  Bmul_4370  5-carboxymethyl-2-hydroxymuconate isomerase  33.33 
 
 		 130 aa  84  6e-16  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.663355  normal  1 
 
 
-
 
NC_011080  SNSL254_A1199  5-carboxymethyl-2-hydroxymuconate delta isomerase  30.4 
 
 		 126 aa  80.9  0.000000000000006  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.682145  normal  0.701788 
 
 
-
 
NC_009511  Swit_4312  5-carboxymethyl-2-hydroxymuconate isomerase  34.15 
 
 		 130 aa  80.5  0.000000000000007  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009674  Bcer98_0973  5-carboxymethyl-2-hydroxymuconate isomerase  33.06 
 
 		 132 aa  80.1  0.000000000000008  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_2718  5-carboxymethyl-2-hydroxymuconate isomerase  33.88 
 
 		 137 aa  80.5  0.000000000000008  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.179185 
 
 
-
 
NC_010682  Rpic_1956  5-carboxymethyl-2-hydroxymuconate isomerase  33.33 
 
 		 129 aa  80.1  0.00000000000001  Ralstonia pickettii 12J  Bacteria  normal  0.394051  normal  0.050021 
 
 
-
 
NC_007948  Bpro_0199  5-carboxymethyl-2-hydroxymuconate isomerase  35.38 
 
 		 137 aa  79.7  0.00000000000001  Polaromonas sp. JS666  Bacteria  normal  0.478927  normal  1 
 
 
-
 
NC_008781  Pnap_0137  5-carboxymethyl-2-hydroxymuconate isomerase  32.28 
 
 		 145 aa  79.7  0.00000000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_1628  5-carboxymethyl-2-hydroxymuconate isomerase  32.52 
 
 		 129 aa  77.4  0.00000000000005  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.689916 
 
 
-
 
NC_003295  RSc2419  putative 5-carboxymethyl-2-hydroxymuconate DELTA-isomerase protein  30.89 
 
 		 134 aa  72  0.000000000003  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_2223  5-carboxymethyl-2-hydroxymuconate isomerase  30.08 
 
 		 133 aa  66.6  0.0000000001  Ralstonia pickettii 12D  Bacteria  normal  0.910475  normal  1 
 
 
-
 
NC_010322  PputGB1_3500  5-carboxymethyl-2-hydroxymuconate isomerase  27.48 
 
 		 134 aa  65.9  0.0000000002  Pseudomonas putida GB-1  Bacteria  normal  0.479993  normal  1 
 
 
-
 
NC_010682  Rpic_2683  5-carboxymethyl-2-hydroxymuconate isomerase  28.46 
 
 		 133 aa  60.1  0.00000001  Ralstonia pickettii 12J  Bacteria  normal  0.510772  normal  1 
 
 
-
 
NC_009457  VC0395_A2242  putative 5-carboxymethyl-2-hydroxymuconate delta isomerase  29.57 
 
 		 116 aa  58.2  0.00000004  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_009831  Ssed_1837  5-carboxymethyl-2-hydroxymuconate isomerase  31.91 
 
 		 117 aa  57.8  0.00000004  Shewanella sediminis HAW-EB3  Bacteria  normal  0.60746  normal  1 
 
 
-
 
NC_010002  Daci_0102  5-carboxymethyl-2-hydroxymuconate isomerase  28.57 
 
 		 144 aa  56.2  0.0000001  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011312  VSAL_I0284  5-carboxymethyl-2-hydroxymuconate isomerase  29.59 
 
 		 116 aa  55.8  0.0000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_001759  5-carboxymethyl-2-hydroxymuconate delta-isomerase  31.52 
 
 		 115 aa  55.8  0.0000002  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_1507  5-carboxymethyl-2-hydroxymuconate isomerase  29.17 
 
 		 115 aa  53.9  0.0000007  Shewanella loihica PV-4  Bacteria  normal  0.0110902  normal  0.8408 
 
 
-
 
NC_012791  Vapar_0241  5-carboxymethyl-2-hydroxymuconate isomerase  28.79 
 
 		 134 aa  53.9  0.0000008  Variovorax paradoxus S110  Bacteria  normal  0.640465  n/a   
 
 
-
 
NC_009654  Mmwyl1_3292  5-carboxymethyl-2-hydroxymuconate isomerase  29.67 
 
 		 116 aa  49.3  0.00002  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B0126  5-carboxymethyl-2-hydroxymuconate isomerase  29.51 
 
 		 136 aa  48.5  0.00003  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009783  VIBHAR_00710  hypothetical protein  26.09 
 
 		 115 aa  48.1  0.00004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_1603  5-carboxymethyl-2-hydroxymuconate isomerase  31.51 
 
 		 114 aa  44.3  0.0006  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00936983  n/a   
 
 
-
 
NC_007778  RPB_2522  5-carboxymethyl-2-hydroxymuconate delta isomerase  30.19 
 
 		 115 aa  43.1  0.001  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010506  Swoo_0976  5-carboxymethyl-2-hydroxymuconate isomerase  28.26 
 
 		 111 aa  42.7  0.002  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  0.872717 
 
 
-
 
NC_010002  Daci_1831  5-carboxymethyl-2-hydroxymuconate isomerase  29.06 
 
 		 119 aa  42.4  0.002  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_3395  5-carboxymethyl-2-hydroxymuconate isomerase  29.75 
 
 		 114 aa  41.6  0.004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0493493  n/a   
 
 
-
 
NC_011992  Dtpsy_2818  5-carboxymethyl-2-hydroxymuconate isomerase  32.61 
 
 		 120 aa  41.2  0.004  Acidovorax ebreus TPSY  Bacteria  normal  0.423818  n/a   
 
 
-
 
NC_008782  Ajs_3495  5-carboxymethyl-2-hydroxymuconate isomerase  32.61 
 
 		 120 aa  41.2  0.004  Acidovorax sp. JS42  Bacteria  normal  0.314238  normal  1 
 
 
-
 
NC_009439  Pmen_1340  5-carboxymethyl-2-hydroxymuconate isomerase-like protein  36.11 
 
 		 117 aa  40.4  0.007  Pseudomonas mendocina ymp  Bacteria  normal  0.271195  normal  1 
 
 
-
 
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