52 homologs were found in PanDaTox collection
for query gene Pput_2502 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_3259  acyl-CoA dehydrogenase-related protein  98.85 
 
 
347 aa  691    Pseudomonas putida KT2440  Bacteria  normal  0.543921  normal 
 
 
-
 
NC_010322  PputGB1_2636  acyl-CoA dehydrogenase  91.35 
 
 
347 aa  639    Pseudomonas putida GB-1  Bacteria  normal  0.292935  normal  0.528602 
 
 
-
 
NC_009512  Pput_2502  hypothetical protein  100 
 
 
347 aa  697    Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2652  acyl-CoA dehydrogenase  81.84 
 
 
347 aa  562  1.0000000000000001e-159  Pseudomonas putida W619  Bacteria  normal  0.530272  normal  0.685897 
 
 
-
 
NC_004578  PSPTO_3131  hypothetical protein  58.88 
 
 
337 aa  333  2e-90  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.470644  n/a   
 
 
-
 
NC_007492  Pfl01_2543  hypothetical protein  56.96 
 
 
332 aa  330  2e-89  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.730703 
 
 
-
 
NC_007005  Psyr_2998  hypothetical protein  57.23 
 
 
337 aa  328  7e-89  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5416  putative acyl-CoA dehydrogenase-related protein  56.39 
 
 
388 aa  304  1.0000000000000001e-81  Burkholderia phymatum STM815  Bacteria  normal  normal  0.699876 
 
 
-
 
NC_010681  Bphyt_2240  putative acyl-CoA dehydrogenase-related protein  51.8 
 
 
392 aa  293  3e-78  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2027  putative acyl-CoA dehydrogenase-related protein  55.85 
 
 
335 aa  291  9e-78  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5871  putative acyl-CoA dehydrogenase-related protein  52.4 
 
 
363 aa  282  6.000000000000001e-75  Delftia acidovorans SPH-1  Bacteria  normal  0.845489  normal  0.406047 
 
 
-
 
NC_007348  Reut_B4937  acyl-CoA dehydrogenase-related protein  49.19 
 
 
334 aa  267  2e-70  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1801  putative acyl-CoA dehydrogenase-related protein  41.02 
 
 
362 aa  248  1e-64  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.162926 
 
 
-
 
NC_014151  Cfla_0512  hypothetical protein  40.06 
 
 
338 aa  186  7e-46  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0189199  decreased coverage  0.000000311595 
 
 
-
 
NC_013441  Gbro_0202  hypothetical protein  41.98 
 
 
333 aa  183  3e-45  Gordonia bronchialis DSM 43247  Bacteria  normal  0.499323  n/a   
 
 
-
 
NC_013093  Amir_2567  putative acyl-CoA dehydrogenase-related protein  40.79 
 
 
359 aa  182  9.000000000000001e-45  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752192  n/a   
 
 
-
 
NC_013521  Sked_20110  hypothetical protein  38.87 
 
 
382 aa  178  1e-43  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.252423  normal  0.481515 
 
 
-
 
NC_009338  Mflv_0021  dehydrogenase  45.39 
 
 
313 aa  167  2e-40  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0755375  normal 
 
 
-
 
NC_008541  Arth_0335  hypothetical protein  36.93 
 
 
341 aa  163  4.0000000000000004e-39  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3272  putative acyl-CoA dehydrogenase-related protein  41.47 
 
 
396 aa  162  8.000000000000001e-39  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.00000123433  hitchhiker  0.0000576183 
 
 
-
 
NC_011886  Achl_0555  hypothetical protein  37.21 
 
 
350 aa  148  1.0000000000000001e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012803  Mlut_01080  hypothetical protein  36.57 
 
 
372 aa  136  5e-31  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0138  cyclic nucleotide-binding protein  29.9 
 
 
382 aa  97.1  5e-19  Methylobacterium populi BJ001  Bacteria  normal  0.363055  normal  0.0562136 
 
 
-
 
NC_010505  Mrad2831_3329  acyl-CoA dehydrogenase type 2  30.38 
 
 
382 aa  94.4  3e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.684525  normal 
 
 
-
 
NC_010172  Mext_3848  acyl-CoA dehydrogenase type 2  31.27 
 
 
391 aa  91.7  2e-17  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.680066 
 
 
-
 
NC_011666  Msil_3593  acyl-CoA dehydrogenase domain protein  29.46 
 
 
385 aa  89.7  7e-17  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011365  Gdia_0796  Acyl-CoA dehydrogenase-like protein  30.35 
 
 
381 aa  89  1e-16  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.585612  normal  0.628725 
 
 
-
 
NC_011757  Mchl_4157  Acyl-CoA dehydrogenase type 2 domain  30.93 
 
 
391 aa  88.2  2e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0737881  normal 
 
 
-
 
NC_010725  Mpop_4305  Acyl-CoA dehydrogenase type 2 domain  30.1 
 
 
412 aa  86.3  7e-16  Methylobacterium populi BJ001  Bacteria  normal  0.0499711  normal 
 
 
-
 
NC_007958  RPD_0575  Acyl-CoA dehydrogenase  29.41 
 
 
322 aa  85.1  0.000000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2922  Acyl-CoA dehydrogenase type 2 domain protein  25.08 
 
 
391 aa  81.6  0.00000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4098  acyl-CoA dehydrogenase  29.07 
 
 
373 aa  79.3  0.00000000000008  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.461592  normal  0.148654 
 
 
-
 
NC_008148  Rxyl_1346  hypothetical protein  26 
 
 
364 aa  64.3  0.000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0806475  n/a   
 
 
-
 
NC_009511  Swit_1842  acyl-CoA dehydrogenase domain-containing protein  25.14 
 
 
387 aa  54.3  0.000003  Sphingomonas wittichii RW1  Bacteria  normal  0.982054  normal 
 
 
-
 
NC_010501  PputW619_4988  acyl-CoA dehydrogenase type 2  30.36 
 
 
413 aa  50.4  0.00004  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0224  DszC family monooxygenase  30.77 
 
 
413 aa  50.4  0.00004  Pseudomonas putida KT2440  Bacteria  normal  0.88641  hitchhiker  0.00688358 
 
 
-
 
NC_010322  PputGB1_0248  acyl-CoA dehydrogenase type 2  30.77 
 
 
413 aa  50.4  0.00005  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0239  acyl-CoA dehydrogenase type 2  30.77 
 
 
413 aa  50.4  0.00005  Pseudomonas putida F1  Bacteria  normal  normal  0.238794 
 
 
-
 
NC_012560  Avin_31490  Acyl-CoA dehydrogenase family protein  30.14 
 
 
402 aa  48.1  0.0002  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4989  acyl-CoA dehydrogenase type 2  27.66 
 
 
393 aa  47.4  0.0004  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2362  acyl-CoA dehydrogenase type 2  24.08 
 
 
399 aa  46.2  0.0008  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00266653  hitchhiker  0.00112869 
 
 
-
 
NC_010322  PputGB1_3342  acyl-CoA dehydrogenase type 2  24.89 
 
 
410 aa  46.2  0.0008  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2053  acyl-CoA dehydrogenase type 2  27.65 
 
 
403 aa  46.2  0.001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_1173  Acyl-CoA dehydrogenase type 2 domain protein  25.36 
 
 
383 aa  45.8  0.001  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2915  hypothetical protein  25.71 
 
 
405 aa  45.1  0.002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.281087  n/a   
 
 
-
 
NC_008463  PA14_34320  DszC family monooxygenase  28.12 
 
 
411 aa  43.5  0.005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.404084  normal  0.0301883 
 
 
-
 
NC_009656  PSPA7_2916  hypothetical protein  28.12 
 
 
411 aa  43.5  0.006  Pseudomonas aeruginosa PA7  Bacteria  normal  0.548504  n/a   
 
 
-
 
NC_010511  M446_1593  acyl-CoA dehydrogenase type 2  31.69 
 
 
407 aa  43.1  0.007  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.513495 
 
 
-
 
NC_010581  Bind_2054  acyl-CoA dehydrogenase type 2  34.67 
 
 
415 aa  42.7  0.009  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.876427  normal 
 
 
-
 
NC_002947  PP_0223  DszC family monooxygenase  26.24 
 
 
406 aa  42.7  0.009  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.00885592  hitchhiker  0.00679283 
 
 
-
 
NC_008463  PA14_34300  DszC family monooxygenase  25.31 
 
 
405 aa  42.7  0.01  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.803163  normal  0.0145718 
 
 
-
 
NC_009512  Pput_0238  acyl-CoA dehydrogenase type 2  26.24 
 
 
393 aa  42.7  0.01  Pseudomonas putida F1  Bacteria  normal  0.679999  normal  0.247147 
 
 
-
 
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