14 homologs were found in PanDaTox collection
for query gene PC1_2211 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012917  PC1_2211  type III secretion system apparatus protein YscQ/HrcQ  100 
 
 		 386 aa  780    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.729158  n/a   
 
 
-
 
NC_012912  Dd1591_1886  type III secretion system apparatus protein YscQ/HrcQ  39.95 
 
 		 387 aa  226  4e-58  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_0045  surface presentation of antigens (SPOA) protein  47.25 
 
 		 133 aa  77  0.0000000000005  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_1209  type III secretion protein HrcQb  39.64 
 
 		 132 aa  75.9  0.000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.237535  normal  0.472889 
 
 
-
 
NC_004578  PSPTO_1396  type III secretion protein HrcQb  50 
 
 		 137 aa  71.6  0.00000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_0044  hypothetical protein  29.73 
 
 		 238 aa  70.5  0.00000000005  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_1210  type III secretion protein HrcQa  29.75 
 
 		 238 aa  68.6  0.0000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.128309  normal  0.520758 
 
 
-
 
NC_004578  PSPTO_1397  type III secretion protein HrcQa  26.57 
 
 		 238 aa  64.3  0.000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007760  Adeh_0705  surface presentation of antigens (SPOA) protein  32.12 
 
 		 324 aa  49.7  0.00008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.148267  n/a   
 
 
-
 
NC_011145  AnaeK_0740  type III secretion system apparatus protein YscQ/HrcQ  30.66 
 
 		 324 aa  47.8  0.0003  Anaeromyxobacter sp. K  Bacteria  normal  0.0456239  n/a   
 
 
-
 
NC_011891  A2cp1_0741  type III secretion system apparatus protein YscQ/HrcQ  30.66 
 
 		 324 aa  48.1  0.0003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.1614  n/a   
 
 
-
 
NC_007951  Bxe_A3123  putative type III secretion protein, FliN like  27.18 
 
 		 323 aa  45.1  0.002  Burkholderia xenovorans LB400  Bacteria  normal  0.0613641  hitchhiker  0.00272793 
 
 
-
 
NC_009675  Anae109_0747  type III secretion system apparatus protein YscQ/HrcQ  35.06 
 
 		 334 aa  45.1  0.002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.12595  normal  1 
 
 
-
 
NC_009832  Spro_2955  flagellar motor switch protein FliN  28.57 
 
 		 137 aa  43.1  0.008  Serratia proteamaculans 568  Bacteria  normal  1  normal  1 
 
 
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