12 homologs were found in PanDaTox collection
for query gene Dshi_3987 on replicon NC_009957
Organism: Dinoroseobacter shibae DFL 12



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009957  Dshi_3987  hypothetical protein  100 
 
 
354 aa  744    Dinoroseobacter shibae DFL 12  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2941  hypothetical protein  39.83 
 
 
395 aa  280  4e-74  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2047  hypothetical protein  39.32 
 
 
398 aa  257  2e-67  Parvibaculum lavamentivorans DS-1  Bacteria  normal  hitchhiker  0.000225878 
 
 
-
 
NC_008312  Tery_4988  hypothetical protein  29.61 
 
 
284 aa  93.6  4e-18  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.505763 
 
 
-
 
NC_011737  PCC7424_5355  WD-40 repeat protein  30.28 
 
 
1411 aa  85.9  9e-16  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.113671 
 
 
-
 
NC_008312  Tery_1822  NB-ARC  31.6 
 
 
977 aa  84  0.000000000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  0.244157  normal  0.101864 
 
 
-
 
NC_009665  Shew185_3674  hypothetical protein  31 
 
 
1381 aa  81.3  0.00000000000002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1817  TPR repeat-containing protein  26.4 
 
 
945 aa  61.6  0.00000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.703136  n/a   
 
 
-
 
BN001304  ANIA_10921  NACHT and WD domain protein (AFU_orthologue; AFUA_3G07460)  29.95 
 
 
1602 aa  60.5  0.00000005  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal 
 
 
-
 
NC_008312  Tery_5005  hypothetical protein  27.61 
 
 
189 aa  58.2  0.0000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
BN001306  ANIA_02895  LipA and NB-ARC domain protein (AFU_orthologue; AFUA_3G11500)  24.3 
 
 
1478 aa  55.1  0.000002  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal 
 
 
-
 
NC_012917  PC1_0721  hypothetical protein  27.43 
 
 
193 aa  45.1  0.002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.699713  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>