88 homologs were found in PanDaTox collection
for query gene Cthe_2901 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_2901  putative anti-sigma regulatory factor, serine/threonine protein kinase  100 
 
 
144 aa  282  1e-75  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00340315  n/a   
 
 
-
 
NC_012034  Athe_2394  putative anti-sigma regulatory factor, serine/threonine protein kinase  48.36 
 
 
150 aa  119  1e-26  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0401  putative anti-sigma regulatory factor, serine/threonine protein kinase  40.94 
 
 
144 aa  96.7  9e-20  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00256167  n/a   
 
 
-
 
NC_008255  CHU_3500  anti-sigma regulatory factor  33.59 
 
 
133 aa  69.7  1e-11  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.314034  normal 
 
 
-
 
NC_011726  PCC8801_4084  putative anti-sigma regulatory factor, serine/threonine protein kinase  33.04 
 
 
146 aa  69.3  2e-11  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_4123  putative anti-sigma regulatory factor, serine/threonine protein kinase  33.04 
 
 
146 aa  69.3  2e-11  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_2243  putative anti-sigma regulatory factor, serine/threonine protein kinase  33.33 
 
 
159 aa  66.6  1e-10  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0809953  normal  0.451472 
 
 
-
 
NC_009943  Dole_0141  putative anti-sigma regulatory factor, serine/threonine protein kinase  34.65 
 
 
160 aa  66.2  1e-10  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_3653  putative anti-sigma regulatory factor serine/threonine protein kinase  33.04 
 
 
149 aa  65.9  2e-10  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3304  putative anti-sigma regulatory factor, serine/threonine protein kinase  28.45 
 
 
153 aa  65.1  3e-10  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_3633  putative anti-sigma regulatory factor (Ser/Thr protein kinase)  30.36 
 
 
149 aa  64.7  4e-10  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.327688 
 
 
-
 
NC_002939  GSU1426  rsbW protein, putative  31.75 
 
 
149 aa  63.9  7e-10  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1875  anti-sigma regulatory factor  31.86 
 
 
139 aa  62.4  2e-09  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  2.01046e-07  n/a   
 
 
-
 
NC_008009  Acid345_2317  putative anti-sigma regulatory factor, serine/threonine protein kinase  28.06 
 
 
155 aa  62  2e-09  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.128595  normal  0.13523 
 
 
-
 
NC_014148  Plim_2056  anti-sigma regulatory factor  31.53 
 
 
143 aa  60.5  8e-09  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.773482  n/a   
 
 
-
 
NC_007517  Gmet_1228  putative anti-sigma regulatory factor (serine/threonine protein kinase)  32.62 
 
 
144 aa  59.7  1e-08  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.011235 
 
 
-
 
NC_013501  Rmar_1323  putative anti-sigma regulatory factor, serine/threonine protein kinase  34.74 
 
 
134 aa  58.9  2e-08  Rhodothermus marinus DSM 4252  Bacteria  normal  0.105677  n/a   
 
 
-
 
NC_011830  Dhaf_4432  putative anti-sigma regulatory factor, serine/threonine protein kinase  27.66 
 
 
149 aa  58.9  2e-08  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2977  anti-sigma regulatory factor (Ser/Thr protein kinase  30.09 
 
 
141 aa  58.5  3e-08  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2661  putative anti-sigma regulatory factor, serine/threonine protein kinase  33.33 
 
 
151 aa  58.2  4e-08  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0789133  n/a   
 
 
-
 
NC_009091  P9301_09361  anti-sigma regulatory factor (Ser/Thr protein kinase)  38.14 
 
 
144 aa  58.2  4e-08  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1438  putative anti-sigma regulatory factor  31.78 
 
 
164 aa  58.2  4e-08  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0533473  normal  0.759887 
 
 
-
 
NC_007577  PMT9312_0877  anti-sigma regulatory factor (Ser/Thr protein kinase)  39.18 
 
 
144 aa  56.6  1e-07  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_008817  P9515_10061  anti-sigma regulatory factor (Ser/Thr protein kinase)  35.05 
 
 
147 aa  55.5  2e-07  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.292837  n/a   
 
 
-
 
NC_008816  A9601_09371  anti-sigma regulatory factor (Ser/Thr protein kinase)  37.11 
 
 
144 aa  55.8  2e-07  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.596891  n/a   
 
 
-
 
NC_011884  Cyan7425_3338  putative anti-sigma regulatory factor, serine/threonine protein kinase  30.1 
 
 
138 aa  55.5  3e-07  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_3187  putative anti-sigma regulatory factor, serine/threonine protein kinase  33.08 
 
 
140 aa  53.9  8e-07  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00310168  n/a   
 
 
-
 
NC_007513  Syncc9902_1270  putative anti-sigma regulatory factor (serine/threonine protein kinase)  28.12 
 
 
133 aa  52.4  2e-06  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2999  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.03 
 
 
136 aa  52  2e-06  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008820  P9303_16351  anti-sigma regulatory factor (Ser/Thr protein kinase)  28.57 
 
 
164 aa  52.8  2e-06  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.109557 
 
 
-
 
NC_009483  Gura_2043  putative anti-sigma regulatory factor, serine/threonine protein kinase  27.78 
 
 
141 aa  51.6  3e-06  Geobacter uraniireducens Rf4  Bacteria  unclonable  3.88253e-11  n/a   
 
 
-
 
NC_013411  GYMC61_0373  anti-sigma F factor  32.28 
 
 
146 aa  52  3e-06  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_2102  putative anti-sigma regulatory factor, serine/threonine protein kinase  27.87 
 
 
143 aa  51.6  3e-06  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2515  putative anti-sigma regulatory factor, serine/threonine protein kinase  32.35 
 
 
148 aa  51.2  5e-06  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.538602  normal  0.204677 
 
 
-
 
NC_008009  Acid345_2985  putative anti-sigma regulatory factor, serine/threonine protein kinase  27 
 
 
321 aa  50.4  8e-06  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.369432  normal 
 
 
-
 
NC_011146  Gbem_2650  putative anti-sigma regulatory factor, serine/threonine protein kinase  26.42 
 
 
141 aa  50.1  9e-06  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1584  putative anti-sigma regulatory factor, serine/threonine protein kinase  26.42 
 
 
141 aa  50.1  9e-06  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011060  Ppha_1516  putative anti-sigma regulatory factor, serine/threonine protein kinase  30.63 
 
 
131 aa  50.1  1e-05  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.124385  n/a   
 
 
-
 
NC_008009  Acid345_4066  response regulator receiver protein  26.77 
 
 
292 aa  49.7  1e-05  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.738646  normal  0.146742 
 
 
-
 
NC_010483  TRQ2_0194  putative anti-sigma regulatory factor, serine/threonine protein kinase  27.08 
 
 
136 aa  50.1  1e-05  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_1200  putative anti-sigma regulatory factor (serine/threonine protein kinase)  28.12 
 
 
145 aa  49.7  2e-05  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_1393  putative anti-sigma regulatory factor, serine/threonine protein kinase  27.27 
 
 
159 aa  49.7  2e-05  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.132217  normal  0.754718 
 
 
-
 
NC_002977  MCA1685  anti-sigma B factor  28.8 
 
 
142 aa  48.5  3e-05  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009976  P9211_07231  anti-sigma regulatory factor (Ser/Thr protein kinase)  30.21 
 
 
131 aa  48.5  3e-05  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal  0.152597 
 
 
-
 
NC_012793  GWCH70_2251  anti-sigma F factor  29.69 
 
 
146 aa  48.1  4e-05  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_4032  putative anti-sigma regulatory factor, serine/threonine protein kinase  26.09 
 
 
155 aa  47.8  5e-05  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0196  putative anti-sigma regulatory factor, serine/threonine protein kinase  25.56 
 
 
136 aa  47.8  5e-05  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2553  putative anti-sigma regulatory factor, serine/threonine protein kinase  25 
 
 
324 aa  47.8  5e-05  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE1121  hypothetical protein  47.73 
 
 
180 aa  47  0.0001  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_1340  putative anti-sigma regulatory factor, serine/threonine protein kinase  24.81 
 
 
139 aa  45.8  0.0002  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.00268511  unclonable  1.09238e-06 
 
 
-
 
NC_013093  Amir_5361  putative anti-sigma regulatory factor, serine/threonine protein kinase  20.44 
 
 
265 aa  45.4  0.0003  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1722  putative anti-sigma regulatory factor (serine/threonine protein kinase)  28.89 
 
 
118 aa  45.1  0.0003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0271292  n/a   
 
 
-
 
NC_014148  Plim_2761  response regulator receiver  24.8 
 
 
300 aa  44.7  0.0004  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.428071  n/a   
 
 
-
 
NC_005957  BT9727_3814  anti-sigma F factor  29.84 
 
 
146 aa  44.3  0.0005  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS3984  anti-sigma F factor  29.84 
 
 
146 aa  44.3  0.0005  Bacillus anthracis str. Sterne  Bacteria  normal  0.132565  n/a   
 
 
-
 
NC_003909  BCE_4143  anti-sigma F factor  29.84 
 
 
146 aa  44.3  0.0005  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00316995  n/a   
 
 
-
 
NC_006274  BCZK3830  anti-sigma F factor  29.84 
 
 
146 aa  44.3  0.0005  Bacillus cereus E33L  Bacteria  normal  0.0386677  n/a   
 
 
-
 
NC_007530  GBAA_4295  anti-sigma F factor  29.84 
 
 
146 aa  44.3  0.0005  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.65439  n/a   
 
 
-
 
NC_011773  BCAH820_4095  anti-sigma F factor  29.84 
 
 
146 aa  44.3  0.0005  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  3.69426e-22 
 
 
-
 
NC_011658  BCAH187_A4206  anti-sigma F factor  29.84 
 
 
146 aa  44.3  0.0005  Bacillus cereus AH187  Bacteria  unclonable  1.34887e-09  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3904  anti-sigma F factor  29.84 
 
 
146 aa  44.3  0.0005  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B1055  anti-sigma F factor  29.84 
 
 
146 aa  43.9  0.0007  Bacillus cereus G9842  Bacteria  normal  normal  0.0411626 
 
 
-
 
NC_011725  BCB4264_A4183  anti-sigma F factor  29.84 
 
 
146 aa  43.9  0.0007  Bacillus cereus B4264  Bacteria  normal  0.0790038  n/a   
 
 
-
 
NC_014165  Tbis_3337  putative anti-sigma regulatory factor, serine/threonine protein kinase  27.1 
 
 
158 aa  43.5  0.001  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0611  putative anti-sigma regulatory factor (serine/threonine protein kinase)  30.09 
 
 
136 aa  43.1  0.001  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  2.21562e-08  n/a   
 
 
-
 
NC_009674  Bcer98_2772  anti-sigma F factor  29.03 
 
 
146 aa  43.1  0.001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0313076  n/a   
 
 
-
 
NC_013171  Apre_1471  putative signal transduction histidine kinase  28.57 
 
 
127 aa  43.1  0.001  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_1112  putative anti-sigma regulatory factor, serine/threonine protein kinase  24.36 
 
 
160 aa  42.4  0.002  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1745  anti-sigma regulatory factor, serine/threonine protein kinase  25.74 
 
 
153 aa  42.7  0.002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007335  PMN2A_0138  anti-sigma regulatory factor (Ser/Thr protein kinase)  34.02 
 
 
130 aa  42.4  0.002  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2331  putative anti-sigma regulatory factor, serine/threonine protein kinase  23.39 
 
 
151 aa  42.4  0.002  Rhodothermus marinus DSM 4252  Bacteria  normal  0.571842  n/a   
 
 
-
 
NC_009667  Oant_1249  signal transduction histidine kinase  34.94 
 
 
460 aa  42.7  0.002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.266116  n/a   
 
 
-
 
NC_008577  Shewana3_2220  response regulator receiver protein  35.05 
 
 
565 aa  42.4  0.002  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1104  anti-sigma F factor  28.19 
 
 
148 aa  42  0.003  Desulfotomaculum reducens MI-1  Bacteria  normal  0.860331  n/a   
 
 
-
 
NC_009712  Mboo_1806  signal transduction histidine kinase  28.41 
 
 
681 aa  41.6  0.003  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal  0.286721 
 
 
-
 
NC_010831  Cphamn1_1139  putative anti-sigma regulatory factor, serine/threonine protein kinase  23.81 
 
 
147 aa  41.6  0.004  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.212464 
 
 
-
 
NC_013216  Dtox_2065  anti-sigma regulatory factor, serine/threonine protein kinase  32.84 
 
 
146 aa  41.2  0.005  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.000202652  normal 
 
 
-
 
NC_008639  Cpha266_1094  putative anti-sigma regulatory factor, serine/threonine protein kinase  21.74 
 
 
146 aa  40.8  0.006  Chlorobium phaeobacteroides DSM 266  Bacteria  unclonable  6.60088e-09  n/a   
 
 
-
 
NC_008789  Hhal_2157  response regulator receiver protein  26.53 
 
 
577 aa  40.8  0.007  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2285  anti-sigma F factor  28.07 
 
 
141 aa  40.4  0.008  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1158  serine-protein kinase RsbW  22.06 
 
 
160 aa  40.4  0.008  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0317  sensor histidine kinase  25.42 
 
 
737 aa  40.4  0.008  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.824856  normal 
 
 
-
 
NC_011831  Cagg_3034  putative anti-sigma regulatory factor, serine/threonine protein kinase  26.5 
 
 
155 aa  40.4  0.009  Chloroflexus aggregans DSM 9485  Bacteria  normal  decreased coverage  2.75353e-06 
 
 
-
 
NC_008819  NATL1_07701  anti-sigma regulatory factor (Ser/Thr protein kinase)  31.68 
 
 
130 aa  40.4  0.009  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.0584131 
 
 
-
 
NC_011773  BCAH820_1067  serine-protein kinase RsbW  22.06 
 
 
160 aa  40  0.01  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  4.13388e-38 
 
 
-
 
NC_007530  GBAA_0991  serine-protein kinase RsbW  22.06 
 
 
160 aa  40  0.01  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3406  histidine kinase internal region  29.2 
 
 
603 aa  40  0.01  Clostridium phytofermentans ISDg  Bacteria  normal  0.264135  n/a   
 
 
-
 
NC_005945  BAS0927  serine-protein kinase RsbW  22.06 
 
 
160 aa  40  0.01  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
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