33 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Ddes_0010  CDS  NC_011883  14407  16290  1884  aspartyl-tRNA synthetase  YP_002478608  decreased coverage  0.000218304  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0018  CDS  NC_011883  24135  24542  408  response regulator receiver protein  YP_002478616  decreased coverage  2.18096e-06  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0019  CDS  NC_011883  24564  25394  831  DSBA oxidoreductase  YP_002478617  decreased coverage  5.75449e-06  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0385  CDS  NC_011883  469073  471889  2817  isoleucyl-tRNA synthetase  YP_002478976  decreased coverage  0.00152699  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0386  CDS  NC_011883  471894  472430  537  lipoprotein signal peptidase  YP_002478977  decreased coverage  0.000832352  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0387  CDS  NC_011883  472427  472633  207  hypothetical protein  YP_002478978  decreased coverage  0.000425998  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0388  CDS  NC_011883  472648  473625  978  tol-pal system protein YbgF  YP_002478979  decreased coverage  0.0022084  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0487  CDS  NC_011883  596882  597238  357  50S ribosomal protein L20  YP_002479077  decreased coverage  5.68702e-05  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0489  CDS  NC_011883  597993  598523  531  translation initiation factor IF-3  YP_002479079  decreased coverage  7.20798e-05  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0490  CDS  NC_011883  598525  600468  1944  threonyl-tRNA synthetase  YP_002479080  decreased coverage  0.00808985  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0689  CDS  NC_011883  817798  818784  987  selenide, water dikinase  YP_002479275  decreased coverage  0.00779233  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0831  CDS  NC_011883  975572  976618  1047  hypothetical protein  YP_002479417  decreased coverage  2.38095e-05  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_0867  CDS  NC_011883  1017082  1017930  849  HflC protein  YP_002479452  decreased coverage  0.00264104  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1080  CDS  NC_011883  1265913  1266569  657  HAD-superfamily hydrolase, subfamily IA, variant 3  YP_002479664  decreased coverage  0.00830882  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1117  CDS  NC_011883  1311253  1312488  1236  cell division protein FtsA  YP_002479700  decreased coverage  1.92043e-05  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1137  CDS  NC_011883  1337226  1338908  1683  putative ABC transporter ATP-binding protein  YP_002479719  decreased coverage  0.000210355  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1198  CDS  NC_011883  1409937  1411022  1086  metalloendopeptidase, glycoprotease family  YP_002479780  decreased coverage  0.00132494  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1199  CDS  NC_011883  1411162  1411485  324  thioredoxin  YP_002479781  decreased coverage  5.34537e-05  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1220    NC_011883  1436025  1436285  261      decreased coverage  6.03808e-06  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1221  CDS  NC_011883  1436431  1436817  387  hypothetical protein  YP_002479802  decreased coverage  6.96042e-06  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1222  CDS  NC_011883  1436781  1438022  1242  plasmid recombination protein  YP_002479803  decreased coverage  6.70859e-05  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1247  CDS  NC_011883  1465329  1465742  414  hypothetical protein  YP_002479828  decreased coverage  0.00835759  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1389  CDS  NC_011883  1662475  1663296  822  hypothetical protein  YP_002479969  decreased coverage  0.000128552  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1526  CDS  NC_011883  1823438  1823626  189  hypothetical protein  YP_002480106  decreased coverage  0.00959622  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1612  CDS  NC_011883  1936324  1937358  1035  putative glycerol-3-phosphate acyltransferase PlsX  YP_002480189  decreased coverage  0.000881833  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1950  CDS  NC_011883  2350958  2351944  987  UDP-glucose 4-epimerase  YP_002480524  decreased coverage  0.00010158  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_1951  CDS  NC_011883  2352438  2352884  447  flavodoxin  YP_002480525  decreased coverage  4.25319e-05  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_2206  CDS  NC_011883  2660606  2662111  1506  Leucyl aminopeptidase  YP_002480780  decreased coverage  0.00206778  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_2207  CDS  NC_011883  2662111  2663634  1524  uroporphyrin-III C-methyltransferase  YP_002480781  decreased coverage  0.00880064  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_2241  CDS  NC_011883  2701165  2701488  324  hypothetical protein  YP_002480814  decreased coverage  3.32158e-06  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_2243  CDS  NC_011883  2702638  2703495  858  DNA methylase N-4/N-6 domain protein  YP_002480816  decreased coverage  1.34525e-05  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_2261  CDS  NC_011883  2719436  2720728  1293  diguanylate cyclase  YP_002480834  decreased coverage  0.00439148  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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Ddes_2372  CDS  NC_011883  2859312  2861231  1920  PpiC-type peptidyl-prolyl cis-trans isomerase  YP_002480944  decreased coverage  0.000220409  n/a    Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria 
 
 
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