Gene Ddes_2261 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_2261 
Symbol 
ID7285978 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand
Start bp2719436 
End bp2720728 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content54% 
IMG OID643583083 
Productdiguanylate cyclase 
Protein accessionYP_002480834 
Protein GI220905522 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00439148 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCCCGC GCGATGTATC CCTTGTCTGC GGGAATCGTC TGGATTTCTT GCAGGGCCTG 
CCGCAGGCTC TTGCGGTTAT GCGGGTAGAC CTGGATGTTA TGGGCAGGCC GCGTGATTTG
ATGGTTGTTT ATGGCAATGA AGCGCTTTTT ACACTTTTTG GTGCTCCCCG TGAATGGATG
ACGGGCGTTT CGCTTGTTGA CTCCTGTATG AAGCTGGACA GAAAATGGCT GGAAATTTTC
CGGAAGACTG CCTATCAGGG GCAAGTGCAG GAAATGACCG GTTTCTGGCC TTCGTTGGGC
AGACACCTCG CTGTAACCTG CCATCAGCCA CAATACGGCT ACTGTACCTG TCTTTTTCAG
GATGTGACCG AGCGCGTACA TAAAGAAAAT GATCTGGTAA AAAGCCGTAA CCGTCTTGAA
GCCCTGCTGC ACAGCACTGT TGATATGGTG TTTCAGATTG ATCCGGTTAC GGGGGGCATC
AGCAATCTTG ACCAGGAGCT GGCTGCCTGC GGCGGCCTGC TCAAAGCCAG AAGAGTTCCG
GAAACCCTTC TGATGCAAGG GCTTCTGGCT CCCGGCCAGA ACGATAAAAT CAGCAGCTTG
ATCAACCTTG CCCTGCGCGC TGAAAATGAC TGTACCTGCG AGGTGCGCGC ACGGCTCAAG
GCCGGTTCTC CCTATACCTG GCACAGTCTC ACCGTTGTGG GCTACAGCGA TCCGTGTTCT
AAAGAAATCG GTATAATAGG CTTTCTTAAA GACGTGCATG CCAGCATCAA GGAAAGGGAC
GCCCTGGTGC GCCGGGCAGA AAAAGATCCT CTTTGCGGCA TCTATAACAG GGCTGCCGGC
GAAAACCTCG CTGCTTCCAG GCTGAGCGGA GCGGACGAAA CCTGTCACAG CGCGGCCCTG
CTTGTTTTTG ATCTGGATAA TTTCAAGGTA ATTAACGACA CGGCCGGGCA TGCGGCGGGC
GATGCGGTGC TGAAAGCTTT TGCCGTTCTG CTGGGCCAGT GCTTTCGTAA AGACGATATT
GTTTTTCGGT TTGGCGGGGA TGAGTTTGCC GTTTTTGTGC AGAACATGCC GCAGGAAAGG
ATCATCCGTG TCAGTAAAAA TATCGTGGCA AGGCTGGAAG AACCGCTTGT TGACGATGTG
CGCGTGGGTG CGTGTATTGG GGTTGCCTAC AGCCGGTCGG GCCGCCACAG CTATGAAGAA
CTTTATAAAA TGGCCGATAA GGCTTTGTAC AATGCCAAAG AAGGCGGCAA GGGACAAACC
GCGATTCTTT GTCTGCATGG CAGCGGGGCC TGA
 
Protein sequence
MPPRDVSLVC GNRLDFLQGL PQALAVMRVD LDVMGRPRDL MVVYGNEALF TLFGAPREWM 
TGVSLVDSCM KLDRKWLEIF RKTAYQGQVQ EMTGFWPSLG RHLAVTCHQP QYGYCTCLFQ
DVTERVHKEN DLVKSRNRLE ALLHSTVDMV FQIDPVTGGI SNLDQELAAC GGLLKARRVP
ETLLMQGLLA PGQNDKISSL INLALRAEND CTCEVRARLK AGSPYTWHSL TVVGYSDPCS
KEIGIIGFLK DVHASIKERD ALVRRAEKDP LCGIYNRAAG ENLAASRLSG ADETCHSAAL
LVFDLDNFKV INDTAGHAAG DAVLKAFAVL LGQCFRKDDI VFRFGGDEFA VFVQNMPQER
IIRVSKNIVA RLEEPLVDDV RVGACIGVAY SRSGRHSYEE LYKMADKALY NAKEGGKGQT
AILCLHGSGA