94 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Arth_0483  CDS  NC_008541  514441  515277  837  NAD-dependent epimerase/dehydratase  YP_829982  decreased coverage  0.00129402  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_0813  CDS  NC_008541  879663  882155  2493  ATP-dependent DNA helicase PcrA  YP_830311  decreased coverage  0.00156939  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_0833  CDS  NC_008541  901964  903070  1107  inositol 2-dehydrogenase  YP_830331  decreased coverage  0.000914593  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_0955  CDS  NC_008541  1027914  1028981  1068  UBA/THIF-type NAD/FAD binding protein  YP_830452  decreased coverage  5.16657e-05  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1091  CDS  NC_008541  1178910  1179896  987  hypothetical protein  YP_830585  decreased coverage  6.77339e-08  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1177  CDS  NC_008541  1277512  1278072  561  peptidase A24A, prepilin type IV  YP_830671  decreased coverage  0.00632906  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1178  CDS  NC_008541  1278136  1278606  471  NUDIX hydrolase  YP_830672  decreased coverage  0.0049447  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1179  CDS  NC_008541  1278614  1280230  1617  EmrB/QacA family drug resistance transporter  YP_830673  decreased coverage  0.00903391  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1415  CDS  NC_008541  1575870  1576262  393  hypothetical protein  YP_830909  decreased coverage  0.00199803  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1438  CDS  NC_008541  1598711  1599814  1104  LuxR family transcriptional regulator  YP_830932  decreased coverage  0.0017227  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1458  CDS  NC_008541  1618556  1619074  519  MarR family transcriptional regulator  YP_830952  decreased coverage  0.00644177  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1459  CDS  NC_008541  1619107  1619331  225  hypothetical protein  YP_830953  decreased coverage  0.00288018  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1466  CDS  NC_008541  1625837  1627405  1569  small GTP-binding protein  YP_830960  decreased coverage  0.00807526  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1615  CDS  NC_008541  1800239  1801567  1329  major facilitator transporter  YP_831109  decreased coverage  0.000129753  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1634  CDS  NC_008541  1827405  1827704  300  hypothetical protein  YP_831128  decreased coverage  0.00156977  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1655  CDS  NC_008541  1849904  1851235  1332  acetyl-CoA acetyltransferases  YP_831149  decreased coverage  0.00972339  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1686  CDS  NC_008541  1878800  1879087  288  hypothetical protein  YP_831180  decreased coverage  0.00366824  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1744  CDS  NC_008541  1951358  1952476  1119  L-alanine dehydrogenase  YP_831236  decreased coverage  0.00361156  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1800  CDS  NC_008541  2014919  2015878  960  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding  YP_831290  decreased coverage  0.00330988  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1811  CDS  NC_008541  2027126  2028676  1551  ABC transporter related  YP_831301  decreased coverage  0.00289263  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1891  CDS  NC_008541  2126563  2128014  1452  glycoside hydrolase family protein  YP_831375  decreased coverage  0.001415  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_1892  CDS  NC_008541  2128001  2129884  1884  PTS system, beta-glucoside-specific IIABC subunit  YP_831376  decreased coverage  2.4125e-05  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2065  CDS  NC_008541  2327596  2329071  1476  30S ribosomal protein S1  YP_831545  decreased coverage  0.00632138  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2081  CDS  NC_008541  2348828  2349496  669  phospholipid/glycerol acyltransferase  YP_831561  decreased coverage  0.00967199  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2130  CDS  NC_008541  2400551  2401675  1125  hypothetical protein  YP_831610  decreased coverage  0.000290153  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2131  CDS  NC_008541  2401790  2403352  1563  hypothetical protein  YP_831611  decreased coverage  0.0038643  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2167  CDS  NC_008541  2440832  2441692  861  undecaprenyl pyrophosphate phosphatase  YP_831647  decreased coverage  0.00790926  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2172  CDS  NC_008541  2446155  2447222  1068  tRNA (adenine-58-N(1)-) methyltransferase  YP_831652  decreased coverage  0.00868355  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2176  CDS  NC_008541  2451131  2451958  828  proteasome subunit beta  YP_831656  decreased coverage  0.00215811  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2177  CDS  NC_008541  2451960  2452667  708  20S proteasome, A and B subunits  YP_831657  decreased coverage  0.0017271  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2194  CDS  NC_008541  2471111  2471956  846  hypothetical protein  YP_831674  decreased coverage  0.000105855  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2203  CDS  NC_008541  2481940  2482236  297  antibiotic biosynthesis monooxygenase  YP_831683  decreased coverage  0.00034688  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2216  CDS  NC_008541  2491711  2493438  1728  cytochrome-c oxidase  YP_831696  decreased coverage  0.00587232  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2229  CDS  NC_008541  2508107  2509063  957  GTP-binding protein Era  YP_831709  decreased coverage  0.00352178  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2233  CDS  NC_008541  2512324  2513286  963  hypothetical protein  YP_831713  decreased coverage  0.00153941  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2234  CDS  NC_008541  2513295  2514071  777  16S ribosomal RNA methyltransferase RsmE  YP_831714  decreased coverage  0.00121971  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2249  CDS  NC_008541  2532238  2532987  750  major intrinsic protein  YP_831729  decreased coverage  2.22007e-05  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2278  CDS  NC_008541  2563462  2566140  2679  alanyl-tRNA synthetase  YP_831758  decreased coverage  0.00416969  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2295  CDS  NC_008541  2582616  2584289  1674  hypothetical protein  YP_831775  decreased coverage  0.00478543  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2296  CDS  NC_008541  2584383  2585012  630  hypothetical protein  YP_831776  decreased coverage  0.00826774  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2308  CDS  NC_008541  2597201  2597704  504  NUDIX hydrolase  YP_831788  decreased coverage  0.000433057  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2316  CDS  NC_008541  2605482  2606084  603  histidine triad (HIT) protein  YP_831796  decreased coverage  0.00279696  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2318  CDS  NC_008541  2608248  2611748  3501  DNA polymerase III, alpha subunit  YP_831798  decreased coverage  0.00938531  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2319  CDS  NC_008541  2611745  2612077  333  hypothetical protein  YP_831799  decreased coverage  0.00289895  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2337  CDS  NC_008541  2626341  2627843  1503  polysaccharide deacetylase  YP_831817  decreased coverage  0.00797389  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2382  CDS  NC_008541  2670410  2670760  351  alkylphosphonate utilization operon protein PhnA  YP_831861  decreased coverage  0.00334109  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2406  CDS  NC_008541  2700267  2701676  1410  trigger factor  YP_831885  decreased coverage  0.0022242  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2416  CDS  NC_008541  2710858  2711517  660  hypothetical protein  YP_831895  decreased coverage  0.000448238  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2442  CDS  NC_008541  2738192  2738956  765  hypothetical protein  YP_831921  decreased coverage  0.00412496  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2466  CDS  NC_008541  2763236  2764213  978  putative malonyl-CoA:acyl carrier protein malonyltransferase  YP_831945  decreased coverage  9.80715e-05  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2467  CDS  NC_008541  2764210  2765271  1062  3-oxoacyl-(acyl carrier protein) synthase III  YP_831946  decreased coverage  0.000376191  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2529  CDS  NC_008541  2833225  2834337  1113  branched chain amino acid aminotransferase  YP_832008  decreased coverage  0.00227274  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2530  CDS  NC_008541  2834439  2835491  1053  3-isopropylmalate dehydrogenase  YP_832009  decreased coverage  0.000736484  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2537  CDS  NC_008541  2844693  2845718  1026  ketol-acid reductoisomerase  YP_832016  decreased coverage  0.00800327  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2544  CDS  NC_008541  2854848  2855123  276  hypothetical protein  YP_832023  decreased coverage  0.00622914  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2545  CDS  NC_008541  2855134  2855625  492  MarR family transcriptional regulator  YP_832024  decreased coverage  0.00936337  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2549  CDS  NC_008541  2859299  2860804  1506  malate:quinone oxidoreductase  YP_832028  decreased coverage  0.00140506  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2582  CDS  NC_008541  2898271  2899068  798  hypothetical protein  YP_832061  decreased coverage  0.000119552  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2583  CDS  NC_008541  2899065  2900003  939  glutamate racemase  YP_832062  decreased coverage  0.00016554  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2601  CDS  NC_008541  2916870  2919503  2634  hypothetical protein  YP_832080  decreased coverage  0.00218331  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2602  CDS  NC_008541  2919500  2920846  1347  putative esterase  YP_832081  decreased coverage  0.00037083  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2616  CDS  NC_008541  2931713  2932471  759  WecB/TagA/CpsF family glycosyl transferase  YP_832095  decreased coverage  0.00218629  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2633  CDS  NC_008541  2954671  2955099  429  histidine triad (HIT) protein  YP_832112  decreased coverage  0.00206121  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2634  CDS  NC_008541  2955096  2956259  1164  alcohol dehydrogenase  YP_832113  decreased coverage  0.00621728  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2653  CDS  NC_008541  2976836  2978218  1383  3-phosphoshikimate 1-carboxyvinyltransferase  YP_832132  decreased coverage  0.000365317  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2676  CDS  NC_008541  2999763  3000881  1119  glycosyl transferase, group 1  YP_832155  decreased coverage  0.00158142  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2704  CDS  NC_008541  3038630  3039424  795  hypothetical protein  YP_832183  decreased coverage  0.00973242  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2713  CDS  NC_008541  3050813  3052252  1440  integral membrane protein  YP_832192  decreased coverage  0.000899465  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2746  CDS  NC_008541  3087056  3088300  1245  hypothetical protein  YP_832225  decreased coverage  2.46717e-05  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2767  CDS  NC_008541  3118965  3119963  999  porphobilinogen deaminase  YP_832246  decreased coverage  0.00352178  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2809  CDS  NC_008541  3159095  3159715  621  TetR family transcriptional regulator  YP_832288  decreased coverage  0.00640157  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2838  CDS  NC_008541  3192984  3194204  1221  aminotransferase AlaT  YP_832317  decreased coverage  0.00546919  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2840  CDS  NC_008541  3195285  3196031  747  binding-protein-dependent transport systems inner membrane component  YP_832319  decreased coverage  0.00306406  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2841  CDS  NC_008541  3196028  3196738  711  binding-protein-dependent transport systems inner membrane component  YP_832320  decreased coverage  0.00717598  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2842  CDS  NC_008541  3196738  3197835  1098  ABC transporter related  YP_832321  decreased coverage  0.00414619  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2874  CDS  NC_008541  3232911  3234047  1137  inosine 5-monophosphate dehydrogenase  YP_832353  decreased coverage  0.00446551  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2888  CDS  NC_008541  3253209  3254453  1245  hypothetical protein  YP_832367  decreased coverage  0.00389281  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2923  CDS  NC_008541  3292353  3293123  771  hypothetical protein  YP_832402  decreased coverage  0.00621975  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2960  CDS  NC_008541  3326026  3326409  384  50S ribosomal protein L18P  YP_832439  decreased coverage  0.00477287  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_2962  CDS  NC_008541  3326967  3327365  399  30S ribosomal protein S8  YP_832441  decreased coverage  0.00876753  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_3045  CDS  NC_008541  3413179  3414108  930  hypothetical protein  YP_832524  decreased coverage  1.14501e-06  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_3046  CDS  NC_008541  3414110  3414619  510  ECF subfamily RNA polymerase sigma-24 factor  YP_832525  decreased coverage  1.87373e-07  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_3053  CDS  NC_008541  3423312  3424532  1221  glutathionylspermidine synthase  YP_832532  decreased coverage  0.00288809  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_3148  CDS  NC_008541  3532527  3533462  936  binding-protein-dependent transport systems inner membrane component  YP_832626  decreased coverage  0.00417428  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_3258  CDS  NC_008541  3665214  3665804  591  Ferritin, Dps family protein  YP_832734  decreased coverage  0.000744438  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_3325  CDS  NC_008541  3733230  3735245  2016  Beta-galactosidase  YP_832800  decreased coverage  0.0011475  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_3326  CDS  NC_008541  3735402  3736763  1362  extracellular solute-binding protein  YP_832801  decreased coverage  3.98294e-06  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_3679  CDS  NC_008541  4138516  4140549  2034  FG-GAP repeat-containing protein  YP_833154  decreased coverage  6.68501e-06  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_3955  CDS  NC_008541  4468939  4469769  831  xylose isomerase domain-containing protein  YP_833430  decreased coverage  0.00177251  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_4228  CDS  NC_008539  61634  62497  864  hypothetical protein  YP_829450  decreased coverage  3.90985e-08  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_4240  CDS  NC_008539  68940  69395  456  hypothetical protein  YP_829462  decreased coverage  0.0072533  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_4355  CDS  NC_008538  94908  95912  1005  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components  YP_829373  decreased coverage  4.18029e-05  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_4399  CDS  NC_008537  21996  22304  309  hypothetical protein  YP_829151  decreased coverage  0.000669872  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
Arth_R0041  tRNA  NC_008541  2670834  2670906  73  tRNA-Ala    decreased coverage  0.00164455  n/a    Arthrobacter sp. FB24  Bacteria 
 
 
-
 
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