16 homologs were found in PanDaTox collection
for query gene Rpic12D_1234 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012856  Rpic12D_1234  putative integrase/recombinase  100 
 
 		 103 aa  211  1.9999999999999998e-54  Ralstonia pickettii 12D  Bacteria  normal  0.493457  normal  0.825212 
 
 
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NC_010682  Rpic_1173  putative integrase/recombinase  97.09 
 
 		 103 aa  203  5e-52  Ralstonia pickettii 12J  Bacteria  normal  0.246477  normal  0.310275 
 
 
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NC_009485  BBta_3455  putative integrase/recombinase  52.27 
 
 		 362 aa  96.3  1e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.375642  normal  0.439237 
 
 
-
 
NC_010322  PputGB1_1711  integrase family protein  48.39 
 
 		 380 aa  89  2e-17  Pseudomonas putida GB-1  Bacteria  normal  0.213299  hitchhiker  0.00000987295 
 
 
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NC_009636  Smed_1622  phage integrase family protein  52.27 
 
 		 361 aa  86.7  1e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.487409  normal  0.202066 
 
 
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NC_009656  PSPA7_2363  phage integrase family site specific recombinase  47.31 
 
 		 368 aa  82  0.000000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007973  Rmet_1990  hypothetical protein  57.89 
 
 		 73 aa  69.7  0.00000000001  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.0749115 
 
 
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NC_009049  Rsph17029_2030  phage integrase family protein  36.56 
 
 		 365 aa  57.4  0.00000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.755048  normal  1 
 
 
-
 
NC_010322  PputGB1_1764  hypothetical protein  45.45 
 
 		 74 aa  45.1  0.0004  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.199542 
 
 
-
 
NC_006368  lpp2123  hypothetical protein  32.93 
 
 		 353 aa  43.5  0.001  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_011138  MADE_03598  site-specific recombinase, phage integrase family protein  28.26 
 
 		 380 aa  43.1  0.001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.951563  n/a   
 
 
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NC_003910  CPS_0354  phage integrase family site specific recombinase  25.64 
 
 		 355 aa  42.4  0.002  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_007954  Sden_3233  phage integrase  31.52 
 
 		 356 aa  40.8  0.007  Shewanella denitrificans OS217  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_0745  phage integrase family protein  31.15 
 
 		 357 aa  40.4  0.008  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.107824 
 
 
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NC_012560  Avin_32680  hypothetical protein  52.78 
 
 		 36 aa  40.4  0.008  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_0805  phage integrase family protein  32.73 
 
 		 354 aa  40.4  0.009  Shewanella baltica OS195  Bacteria  normal  1  normal  0.431807 
 
 
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