9 homologs were found in PanDaTox collection
for query gene Rmet_1990 on replicon NC_007973
Organism: Cupriavidus metallidurans CH34



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007973  Rmet_1990  hypothetical protein  100 
 
 		 73 aa  148  2e-35  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.0749115 
 
 
-
 
NC_012856  Rpic12D_1234  putative integrase/recombinase  57.89 
 
 		 103 aa  69.7  0.00000000001  Ralstonia pickettii 12D  Bacteria  normal  0.493457  normal  0.825212 
 
 
-
 
NC_009485  BBta_3455  putative integrase/recombinase  57.89 
 
 		 362 aa  69.3  0.00000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.375642  normal  0.439237 
 
 
-
 
NC_010682  Rpic_1173  putative integrase/recombinase  57.89 
 
 		 103 aa  69.3  0.00000000002  Ralstonia pickettii 12J  Bacteria  normal  0.246477  normal  0.310275 
 
 
-
 
NC_009656  PSPA7_2363  phage integrase family site specific recombinase  57.89 
 
 		 368 aa  65.5  0.0000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_1711  integrase family protein  52.63 
 
 		 380 aa  62.4  0.000000002  Pseudomonas putida GB-1  Bacteria  normal  0.213299  hitchhiker  0.00000987295 
 
 
-
 
NC_009636  Smed_1622  phage integrase family protein  47.37 
 
 		 361 aa  54.7  0.0000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.487409  normal  0.202066 
 
 
-
 
NC_009049  Rsph17029_2030  phage integrase family protein  43.1 
 
 		 365 aa  43.1  0.001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.755048  normal  1 
 
 
-
 
NC_011138  MADE_03598  site-specific recombinase, phage integrase family protein  35 
 
 		 380 aa  40  0.01  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.951563  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>