11 homologs were found in PanDaTox collection
for query gene Rpic12D_1199 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012856  Rpic12D_1199  putative signal peptide protein  100 
 
 		 60 aa  120  8e-27  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  1 
 
 
-
 
NC_010682  Rpic_1106  conserved hypothetical signal peptide protein  98.33 
 
 		 60 aa  119  1.9999999999999998e-26  Ralstonia pickettii 12J  Bacteria  normal  0.0675956  normal  1 
 
 
-
 
NC_003295  RSc1278  putative signal peptide protein  85 
 
 		 60 aa  104  4e-22  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.687203 
 
 
-
 
NC_007973  Rmet_2042  cytochrome c oxidase subunit  62.22 
 
 		 55 aa  61.2  0.000000005  Cupriavidus metallidurans CH34  Bacteria  normal  0.0208839  normal  1 
 
 
-
 
NC_007347  Reut_A2039  cytochrome C oxidase subunit  57.69 
 
 		 54 aa  60.8  0.000000006  Ralstonia eutropha JMP134  Bacteria  normal  0.0319707  n/a   
 
 
-
 
NC_009379  Pnuc_0455  hypothetical protein  61.9 
 
 		 61 aa  58.2  0.00000003  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010531  Pnec_1361  hypothetical protein  61.9 
 
 		 55 aa  56.2  0.0000002  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  1  normal  0.281945 
 
 
-
 
NC_008740  Maqu_1786  Cbb3-type cytochrome oxidase component  40.35 
 
 		 61 aa  45.8  0.0002  Marinobacter aquaeolei VT8  Bacteria  normal  0.569607  n/a   
 
 
-
 
NC_007404  Tbd_0641  cytochrome c oxidase, subunit CcoQ  38.46 
 
 		 54 aa  41.6  0.003  Thiobacillus denitrificans ATCC 25259  Bacteria  hitchhiker  0.000266851  normal  0.653768 
 
 
-
 
NC_009439  Pmen_2606  Cbb3-type cytochrome oxidase component  32.79 
 
 		 64 aa  41.2  0.005  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00000308016  normal  0.790893 
 
 
-
 
NC_009439  Pmen_2601  Cbb3-type cytochrome oxidase component  41.82 
 
 		 59 aa  40.4  0.008  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000197802  normal  0.667935 
 
 
-
 
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