14 homologs were found in PanDaTox collection
for query gene RSc1278 on replicon NC_003295
Organism: Ralstonia solanacearum GMI1000



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_003295  RSc1278  putative signal peptide protein  100 
 
 		 60 aa  121  4e-27  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  0.687203 
 
 
-
 
NC_012856  Rpic12D_1199  putative signal peptide protein  85 
 
 		 60 aa  104  4e-22  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  1 
 
 
-
 
NC_010682  Rpic_1106  conserved hypothetical signal peptide protein  83.33 
 
 		 60 aa  103  1e-21  Ralstonia pickettii 12J  Bacteria  normal  0.0675956  normal  1 
 
 
-
 
NC_007973  Rmet_2042  cytochrome c oxidase subunit  62.22 
 
 		 55 aa  62.4  0.000000002  Cupriavidus metallidurans CH34  Bacteria  normal  0.0208839  normal  1 
 
 
-
 
NC_007347  Reut_A2039  cytochrome C oxidase subunit  53.85 
 
 		 54 aa  59.7  0.00000001  Ralstonia eutropha JMP134  Bacteria  normal  0.0319707  n/a   
 
 
-
 
NC_009379  Pnuc_0455  hypothetical protein  61.9 
 
 		 61 aa  57.4  0.00000006  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010531  Pnec_1361  hypothetical protein  61.9 
 
 		 55 aa  56.6  0.0000001  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  1  normal  0.281945 
 
 
-
 
NC_008740  Maqu_1786  Cbb3-type cytochrome oxidase component  40.35 
 
 		 61 aa  48.5  0.00003  Marinobacter aquaeolei VT8  Bacteria  normal  0.569607  n/a   
 
 
-
 
NC_009439  Pmen_2601  Cbb3-type cytochrome oxidase component  45.45 
 
 		 59 aa  46.6  0.0001  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000197802  normal  0.667935 
 
 
-
 
NC_009439  Pmen_2606  Cbb3-type cytochrome oxidase component  37.7 
 
 		 64 aa  45.4  0.0002  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00000308016  normal  0.790893 
 
 
-
 
NC_008463  PA14_44390  putative cytochrome c oxidase subunit  35 
 
 		 64 aa  42.7  0.002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_3779  cbb3-type cytochrome c oxidase subunit CcoQ  35 
 
 		 61 aa  42.7  0.002  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_0641  cytochrome c oxidase, subunit CcoQ  35.9 
 
 		 54 aa  41.2  0.005  Thiobacillus denitrificans ATCC 25259  Bacteria  hitchhiker  0.000266851  normal  0.653768 
 
 
-
 
NC_009656  PSPA7_3775  cbb3-type cytochrome c oxidase subunit CcoQ  33.33 
 
 		 61 aa  40.4  0.008  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
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