151 homologs were found in PanDaTox collection
for query gene Pden_2473 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008686  Pden_2473  N-acetylmuramic acid-6-phosphate etherase  100 
 
 
292 aa  555  1e-157  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.226466 
 
 
-
 
NC_009636  Smed_3406  N-acetylmuramic acid-6-phosphate etherase  51.42 
 
 
298 aa  234  1.0000000000000001e-60  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3152  N-acetylmuramic acid-6-phosphate etherase  50.88 
 
 
293 aa  216  4e-55  Ruegeria sp. TM1040  Bacteria  decreased coverage  0.00000249376  normal 
 
 
-
 
NC_013440  Hoch_1474  sugar isomerase (SIS)  47.74 
 
 
326 aa  214  9.999999999999999e-55  Haliangium ochraceum DSM 14365  Bacteria  normal  0.35979  normal 
 
 
-
 
NC_011365  Gdia_3142  sugar isomerase (SIS)  48.59 
 
 
316 aa  186  4e-46  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.107968 
 
 
-
 
NC_007802  Jann_1357  N-acetylmuramic acid-6-phosphate etherase  44.52 
 
 
298 aa  184  2.0000000000000003e-45  Jannaschia sp. CCS1  Bacteria  normal  normal  0.545728 
 
 
-
 
NC_008254  Meso_2865  N-acetylmuramic acid-6-phosphate etherase  44.56 
 
 
297 aa  183  3e-45  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2813  N-acetylmuramic acid-6-phosphate etherase  37.68 
 
 
295 aa  176  3e-43  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013515  Smon_0973  glucokinase regulatory-like protein  33.91 
 
 
296 aa  174  9.999999999999999e-43  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009708  YpsIP31758_1143  N-acetylmuramic acid-6-phosphate etherase  39.08 
 
 
295 aa  169  4e-41  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3619  N-acetylmuramic acid-6-phosphate etherase  39.08 
 
 
295 aa  169  4e-41  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1249  N-acetylmuramic acid-6-phosphate etherase  39.08 
 
 
295 aa  169  4e-41  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.767258  n/a   
 
 
-
 
NC_013171  Apre_1541  glucokinase regulatory-like protein  35.42 
 
 
291 aa  169  4e-41  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3661  N-acetylmuramic acid-6-phosphate etherase  39.44 
 
 
297 aa  166  4e-40  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2591  sugar isomerase (SIS)  43.71 
 
 
290 aa  164  2.0000000000000002e-39  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_004409  N-acetylmuramic acid 6-phosphate etherase  36.46 
 
 
309 aa  164  2.0000000000000002e-39  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1079  N-acetylmuramic acid-6-phosphate etherase  38.73 
 
 
313 aa  163  3e-39  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1219  N-acetylmuramic acid-6-phosphate etherase  38.03 
 
 
308 aa  162  7e-39  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2775  N-acetylmuramic acid-6-phosphate etherase  35.56 
 
 
297 aa  161  1e-38  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1469  N-acetylmuramic acid-6-phosphate etherase  34.15 
 
 
295 aa  161  1e-38  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00569055  n/a   
 
 
-
 
NC_011312  VSAL_I1260  N-acetylmuramic acid-6-phosphate etherase  36.62 
 
 
300 aa  161  1e-38  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0620  N-acetylmuramic acid-6-phosphate etherase  38.49 
 
 
301 aa  160  3e-38  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3047  N-acetylmuramic acid-6-phosphate etherase  38.02 
 
 
297 aa  159  6e-38  Enterobacter sp. 638  Bacteria  normal  normal  0.0580573 
 
 
-
 
NC_009457  VC0395_A0221  N-acetylmuramic acid-6-phosphate etherase  34.86 
 
 
307 aa  159  6e-38  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_2617  N-acetylmuramic acid-6-phosphate etherase  36.4 
 
 
304 aa  158  8e-38  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.423001  normal 
 
 
-
 
NC_011757  Mchl_4696  N-acetylmuramic acid-6-phosphate etherase  42.21 
 
 
295 aa  158  9e-38  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2465  glucokinase regulatory-like protein  38.3 
 
 
299 aa  158  1e-37  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_008010  Dgeo_2507  N-acetylmuramic acid-6-phosphate etherase  42.91 
 
 
305 aa  157  2e-37  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0172  N-acetylmuramic acid-6-phosphate etherase  35.09 
 
 
302 aa  157  2e-37  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3056  N-acetylmuramic acid-6-phosphate etherase  38.02 
 
 
308 aa  157  2e-37  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001001  N-acetylmuramic acid 6-phosphate etherase  35.92 
 
 
300 aa  154  1e-36  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2753  glucokinase regulatory-like protein  35.29 
 
 
310 aa  154  2e-36  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_1602  N-acetylmuramic acid-6-phosphate etherase  42.36 
 
 
303 aa  154  2e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0485  N-acetylmuramic acid-6-phosphate etherase  34.22 
 
 
298 aa  153  2.9999999999999998e-36  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0181  N-acetylmuramic acid-6-phosphate etherase  32.53 
 
 
298 aa  153  4e-36  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0176  N-acetylmuramic acid-6-phosphate etherase  32.53 
 
 
298 aa  152  7e-36  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3125  N-acetylmuramic acid-6-phosphate etherase  38.34 
 
 
307 aa  150  2e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.32391  n/a   
 
 
-
 
NC_003910  CPS_2881  N-acetylmuramic acid-6-phosphate etherase  35.29 
 
 
308 aa  150  3e-35  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0335  N-acetylmuramic acid-6-phosphate etherase  34.22 
 
 
303 aa  150  3e-35  Haemophilus somnus 129PT  Bacteria  normal  0.130147  n/a   
 
 
-
 
NC_009783  VIBHAR_00989  N-acetylmuramic acid-6-phosphate etherase  34.86 
 
 
308 aa  149  5e-35  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A2585  N-acetylmuramic acid-6-phosphate etherase  38.25 
 
 
300 aa  149  7e-35  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4327  N-acetylmuramic acid-6-phosphate etherase  42.21 
 
 
295 aa  149  7e-35  Methylobacterium extorquens PA1  Bacteria  normal  0.575579  normal 
 
 
-
 
NC_013203  Apar_1199  glucokinase regulatory-like protein  33.57 
 
 
297 aa  147  2.0000000000000003e-34  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_008530  LGAS_1857  N-acetylmuramic acid-6-phosphate etherase  35.09 
 
 
297 aa  147  2.0000000000000003e-34  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.00000411565  hitchhiker  0.0000000817589 
 
 
-
 
NC_013525  Tter_1512  glucokinase regulatory-like protein  35.21 
 
 
307 aa  147  2.0000000000000003e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011149  SeAg_B2733  N-acetylmuramic acid-6-phosphate etherase  37.12 
 
 
297 aa  147  2.0000000000000003e-34  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5694  N-acetylmuramic acid-6-phosphate etherase  38.69 
 
 
305 aa  147  3e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.324396  normal 
 
 
-
 
NC_013517  Sterm_3833  glucokinase regulatory-like protein  33.33 
 
 
294 aa  146  4.0000000000000006e-34  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1065  N-acetylmuramic acid-6-phosphate etherase  33.33 
 
 
299 aa  146  4.0000000000000006e-34  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2949  N-acetylmuramic acid-6-phosphate etherase  36.74 
 
 
297 aa  145  7.0000000000000006e-34  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7244  N-acetylmuramic acid-6-phosphate etherase  38.43 
 
 
301 aa  145  1e-33  Burkholderia sp. 383  Bacteria  normal  0.304432  normal 
 
 
-
 
NC_008255  CHU_3065  N-acetylmuramic acid-6-phosphate etherase  35.38 
 
 
270 aa  145  1e-33  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2814  N-acetylmuramic acid-6-phosphate etherase  36.74 
 
 
297 aa  144  1e-33  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.728479 
 
 
-
 
NC_008819  NATL1_09881  N-acetylmuramic acid-6-phosphate etherase  33.8 
 
 
310 aa  144  2e-33  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.165644 
 
 
-
 
NC_010725  Mpop_4844  N-acetylmuramic acid-6-phosphate etherase  43.35 
 
 
307 aa  144  2e-33  Methylobacterium populi BJ001  Bacteria  normal  0.593356  normal 
 
 
-
 
NC_011080  SNSL254_A2774  N-acetylmuramic acid-6-phosphate etherase  36.74 
 
 
297 aa  144  2e-33  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2837  N-acetylmuramic acid-6-phosphate etherase  36.74 
 
 
297 aa  144  2e-33  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.718204 
 
 
-
 
NC_008820  P9303_15151  N-acetylmuramic acid-6-phosphate etherase  35.42 
 
 
316 aa  143  3e-33  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.192171 
 
 
-
 
NC_007333  Tfu_2324  N-acetylmuramic acid-6-phosphate etherase  36.64 
 
 
304 aa  142  4e-33  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1663  glucokinase regulatory-like protein  40.77 
 
 
301 aa  142  6e-33  Thermobispora bispora DSM 43833  Bacteria  normal  0.636119  normal  0.203154 
 
 
-
 
NC_010001  Cphy_1121  glucokinase regulatory-like protein  31.25 
 
 
297 aa  142  6e-33  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_09758  glucokinase regulator-related protein  33.03 
 
 
274 aa  142  8e-33  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.199964  n/a   
 
 
-
 
NC_009441  Fjoh_2490  N-acetylmuramic acid-6-phosphate etherase  33.98 
 
 
270 aa  141  9.999999999999999e-33  Flavobacterium johnsoniae UW101  Bacteria  hitchhiker  0.000000186214  n/a   
 
 
-
 
NC_009674  Bcer98_0670  N-acetylmuramic acid-6-phosphate etherase  33.46 
 
 
294 aa  142  9.999999999999999e-33  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0496  N-acetylmuramic acid-6-phosphate etherase  43.82 
 
 
299 aa  141  9.999999999999999e-33  Methylobacterium sp. 4-46  Bacteria  normal  decreased coverage  0.000201517 
 
 
-
 
NC_002976  SERP1899  N-acetylmuramic acid-6-phosphate etherase  31.97 
 
 
295 aa  140  1.9999999999999998e-32  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3803  N-acetylmuramic acid-6-phosphate etherase  37.7 
 
 
316 aa  140  1.9999999999999998e-32  Jannaschia sp. CCS1  Bacteria  hitchhiker  0.0010924  decreased coverage  0.000127342 
 
 
-
 
NC_008312  Tery_0340  N-acetylmuramic acid-6-phosphate etherase  35.34 
 
 
307 aa  141  1.9999999999999998e-32  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2583  N-acetylmuramic acid-6-phosphate etherase  35.56 
 
 
298 aa  140  1.9999999999999998e-32  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_1241  N-acetylmuramic acid-6-phosphate etherase  30.99 
 
 
297 aa  140  3e-32  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.0357447  n/a   
 
 
-
 
NC_013061  Phep_3780  N-acetylmuramic acid-6-phosphate etherase  38.05 
 
 
268 aa  140  3e-32  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009976  P9211_08691  sugar phosphate isomerase  32.14 
 
 
303 aa  140  3.9999999999999997e-32  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal  0.0143494 
 
 
-
 
NC_007335  PMN2A_0315  N-acetylmuramic acid-6-phosphate etherase  32.04 
 
 
310 aa  139  6e-32  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00595  glucokinase regulatory-like protein  33.8 
 
 
331 aa  139  7e-32  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3658  N-acetylmuramic acid-6-phosphate etherase  35.56 
 
 
298 aa  139  7e-32  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_35990  N-acetylmuramic acid-6-phosphate etherase  34.96 
 
 
308 aa  138  8.999999999999999e-32  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.065784  normal  0.17675 
 
 
-
 
NC_013132  Cpin_6811  N-acetylmuramic acid-6-phosphate etherase  39.72 
 
 
266 aa  138  1e-31  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.00997485  hitchhiker  0.000351646 
 
 
-
 
CP001509  ECD_02328  N-acetylmuramic acid-6-phosphate etherase  35.21 
 
 
298 aa  137  2e-31  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1233  glucokinase regulatory-like protein  35.21 
 
 
298 aa  137  2e-31  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2564  N-acetylmuramic acid-6-phosphate etherase  35.21 
 
 
298 aa  137  2e-31  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2714  N-acetylmuramic acid-6-phosphate etherase  35.21 
 
 
298 aa  137  2e-31  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1251  N-acetylmuramic acid-6-phosphate etherase  35.21 
 
 
298 aa  137  2e-31  Escherichia coli ATCC 8739  Bacteria  normal  0.674779  normal  0.258404 
 
 
-
 
NC_012892  B21_02289  hypothetical protein  35.21 
 
 
298 aa  137  2e-31  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_4168  N-acetylmuramic acid-6-phosphate etherase  37.34 
 
 
307 aa  137  3.0000000000000003e-31  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.396685  n/a   
 
 
-
 
NC_010658  SbBS512_E2800  N-acetylmuramic acid-6-phosphate etherase  35.21 
 
 
298 aa  137  3.0000000000000003e-31  Shigella boydii CDC 3083-94  Bacteria  normal  0.505825  n/a   
 
 
-
 
NC_011725  BCB4264_A0876  N-acetylmuramic acid-6-phosphate etherase  32.32 
 
 
294 aa  136  3.0000000000000003e-31  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5916  glucokinase regulatory-like protein  35.51 
 
 
270 aa  135  7.000000000000001e-31  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B4459  N-acetylmuramic acid-6-phosphate etherase  32.32 
 
 
294 aa  135  8e-31  Bacillus cereus G9842  Bacteria  normal  normal  0.772989 
 
 
-
 
BN001302  ANIA_11038  glucokinase regulator family protein, putative (AFU_orthologue; AFUA_1G17490)  37.13 
 
 
373 aa  135  9e-31  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.515331 
 
 
-
 
NC_011658  BCAH187_A0987  N-acetylmuramic acid-6-phosphate etherase  31.94 
 
 
294 aa  135  9e-31  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG1099  N-acetylmuramic acid-6-phosphate etherase  32.38 
 
 
274 aa  135  9.999999999999999e-31  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.648374 
 
 
-
 
NC_007513  Syncc9902_1095  N-acetylmuramic acid-6-phosphate etherase  35.31 
 
 
316 aa  134  9.999999999999999e-31  Synechococcus sp. CC9902  Bacteria  decreased coverage  0.00246557  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0732  N-acetylmuramic acid-6-phosphate etherase  31.94 
 
 
294 aa  135  9.999999999999999e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0732  N-acetylmuramic acid-6-phosphate etherase  32.32 
 
 
294 aa  134  1.9999999999999998e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.114997  n/a   
 
 
-
 
NC_008528  OEOE_0038  N-acetylmuramic acid-6-phosphate etherase  31.83 
 
 
297 aa  134  1.9999999999999998e-30  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_2060  N-acetylmuramic acid-6-phosphate etherase  34.22 
 
 
306 aa  134  1.9999999999999998e-30  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_010644  Emin_1529  glucokinase regulatory-like protein  32.18 
 
 
295 aa  134  1.9999999999999998e-30  Elusimicrobium minutum Pei191  Bacteria  hitchhiker  0.00174969  unclonable  2.72637e-19 
 
 
-
 
NC_009441  Fjoh_4817  N-acetylmuramic acid-6-phosphate etherase  33.79 
 
 
275 aa  133  3e-30  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_2034  N-acetylmuramic acid-6-phosphate etherase  34.22 
 
 
306 aa  133  3e-30  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_005945  BAS0783  N-acetylmuramic acid-6-phosphate etherase  31.94 
 
 
294 aa  133  3.9999999999999996e-30  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
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