232 homologs were found in PanDaTox collection
for query gene Smed_3406 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_3406  N-acetylmuramic acid-6-phosphate etherase  100 
 
 
298 aa  578  1e-164  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3152  N-acetylmuramic acid-6-phosphate etherase  53.15 
 
 
293 aa  245  6e-64  Ruegeria sp. TM1040  Bacteria  decreased coverage  0.00000249376  normal 
 
 
-
 
NC_007802  Jann_1357  N-acetylmuramic acid-6-phosphate etherase  49.31 
 
 
298 aa  227  2e-58  Jannaschia sp. CCS1  Bacteria  normal  normal  0.545728 
 
 
-
 
NC_008686  Pden_2473  N-acetylmuramic acid-6-phosphate etherase  51.42 
 
 
292 aa  210  3e-53  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.226466 
 
 
-
 
NC_010001  Cphy_1121  glucokinase regulatory-like protein  37.02 
 
 
297 aa  197  2.0000000000000003e-49  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1469  N-acetylmuramic acid-6-phosphate etherase  38.89 
 
 
295 aa  192  7e-48  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00569055  n/a   
 
 
-
 
NC_008009  Acid345_2617  N-acetylmuramic acid-6-phosphate etherase  40 
 
 
304 aa  190  2e-47  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.423001  normal 
 
 
-
 
NC_013946  Mrub_2465  glucokinase regulatory-like protein  40.21 
 
 
299 aa  189  5.999999999999999e-47  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009976  P9211_08691  sugar phosphate isomerase  36.64 
 
 
303 aa  182  6e-45  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal  0.0143494 
 
 
-
 
NC_013411  GYMC61_2813  N-acetylmuramic acid-6-phosphate etherase  37.15 
 
 
295 aa  181  1e-44  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013517  Sterm_3833  glucokinase regulatory-like protein  36.46 
 
 
294 aa  171  1e-41  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0670  N-acetylmuramic acid-6-phosphate etherase  36.46 
 
 
294 aa  171  1e-41  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_1474  sugar isomerase (SIS)  42.5 
 
 
326 aa  171  1e-41  Haliangium ochraceum DSM 14365  Bacteria  normal  0.35979  normal 
 
 
-
 
NC_011757  Mchl_4696  N-acetylmuramic acid-6-phosphate etherase  40.99 
 
 
295 aa  170  3e-41  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_3142  sugar isomerase (SIS)  44.67 
 
 
316 aa  170  3e-41  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.107968 
 
 
-
 
NC_013515  Smon_0973  glucokinase regulatory-like protein  32.99 
 
 
296 aa  169  4e-41  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_008010  Dgeo_2507  N-acetylmuramic acid-6-phosphate etherase  42.27 
 
 
305 aa  166  2.9999999999999998e-40  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7244  N-acetylmuramic acid-6-phosphate etherase  38.83 
 
 
301 aa  166  5.9999999999999996e-40  Burkholderia sp. 383  Bacteria  normal  0.304432  normal 
 
 
-
 
NC_013501  Rmar_2753  glucokinase regulatory-like protein  38.41 
 
 
310 aa  166  5.9999999999999996e-40  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_2881  N-acetylmuramic acid-6-phosphate etherase  34.13 
 
 
308 aa  164  1.0000000000000001e-39  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1249  N-acetylmuramic acid-6-phosphate etherase  37.85 
 
 
295 aa  164  2.0000000000000002e-39  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.767258  n/a   
 
 
-
 
NC_011894  Mnod_1602  N-acetylmuramic acid-6-phosphate etherase  41.64 
 
 
303 aa  164  2.0000000000000002e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3619  N-acetylmuramic acid-6-phosphate etherase  37.85 
 
 
295 aa  164  2.0000000000000002e-39  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_1199  glucokinase regulatory-like protein  36.08 
 
 
297 aa  164  2.0000000000000002e-39  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1143  N-acetylmuramic acid-6-phosphate etherase  37.85 
 
 
295 aa  164  2.0000000000000002e-39  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2591  sugar isomerase (SIS)  47.09 
 
 
290 aa  163  3e-39  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2865  N-acetylmuramic acid-6-phosphate etherase  40.54 
 
 
297 aa  163  3e-39  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3056  N-acetylmuramic acid-6-phosphate etherase  38.49 
 
 
308 aa  163  3e-39  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2775  N-acetylmuramic acid-6-phosphate etherase  35.42 
 
 
297 aa  162  6e-39  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1219  N-acetylmuramic acid-6-phosphate etherase  38.14 
 
 
308 aa  162  6e-39  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0221  N-acetylmuramic acid-6-phosphate etherase  35.42 
 
 
307 aa  162  7e-39  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1663  glucokinase regulatory-like protein  41.2 
 
 
301 aa  162  9e-39  Thermobispora bispora DSM 43833  Bacteria  normal  0.636119  normal  0.203154 
 
 
-
 
NC_008527  LACR_1241  N-acetylmuramic acid-6-phosphate etherase  36.5 
 
 
297 aa  160  2e-38  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.0357447  n/a   
 
 
-
 
NC_009457  VC0395_A2585  N-acetylmuramic acid-6-phosphate etherase  36.11 
 
 
300 aa  160  3e-38  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3125  N-acetylmuramic acid-6-phosphate etherase  35.42 
 
 
307 aa  159  4e-38  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.32391  n/a   
 
 
-
 
NC_009832  Spro_3661  N-acetylmuramic acid-6-phosphate etherase  38.14 
 
 
297 aa  159  4e-38  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4327  N-acetylmuramic acid-6-phosphate etherase  40.99 
 
 
295 aa  159  5e-38  Methylobacterium extorquens PA1  Bacteria  normal  0.575579  normal 
 
 
-
 
NC_005945  BAS0783  N-acetylmuramic acid-6-phosphate etherase  33.79 
 
 
294 aa  158  1e-37  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0822  N-acetylmuramic acid-6-phosphate etherase  33.79 
 
 
294 aa  158  1e-37  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.199638  n/a   
 
 
-
 
NC_008528  OEOE_0038  N-acetylmuramic acid-6-phosphate etherase  35.86 
 
 
297 aa  157  1e-37  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0172  N-acetylmuramic acid-6-phosphate etherase  33.1 
 
 
302 aa  157  1e-37  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007335  PMN2A_0315  N-acetylmuramic acid-6-phosphate etherase  35.27 
 
 
310 aa  157  2e-37  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0918  N-acetylmuramic acid-6-phosphate etherase  33.79 
 
 
294 aa  157  2e-37  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  5.20197e-42 
 
 
-
 
NC_006274  BCZK0718  N-acetylmuramic acid-6-phosphate etherase  35.45 
 
 
294 aa  157  3e-37  Bacillus cereus E33L  Bacteria  normal  0.188142  n/a   
 
 
-
 
NC_005957  BT9727_0732  N-acetylmuramic acid-6-phosphate etherase  35.45 
 
 
294 aa  156  4e-37  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.114997  n/a   
 
 
-
 
NC_011312  VSAL_I1260  N-acetylmuramic acid-6-phosphate etherase  34.6 
 
 
300 aa  155  5.0000000000000005e-37  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4844  N-acetylmuramic acid-6-phosphate etherase  40.64 
 
 
307 aa  155  6e-37  Methylobacterium populi BJ001  Bacteria  normal  0.593356  normal 
 
 
-
 
NC_011725  BCB4264_A0876  N-acetylmuramic acid-6-phosphate etherase  33.11 
 
 
294 aa  155  9e-37  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008820  P9303_15151  N-acetylmuramic acid-6-phosphate etherase  35.27 
 
 
316 aa  155  9e-37  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal  0.192171 
 
 
-
 
NC_007333  Tfu_2324  N-acetylmuramic acid-6-phosphate etherase  37.12 
 
 
304 aa  155  1e-36  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3803  N-acetylmuramic acid-6-phosphate etherase  36.46 
 
 
316 aa  155  1e-36  Jannaschia sp. CCS1  Bacteria  hitchhiker  0.0010924  decreased coverage  0.000127342 
 
 
-
 
NC_013595  Sros_5694  N-acetylmuramic acid-6-phosphate etherase  40.3 
 
 
305 aa  155  1e-36  Streptosporangium roseum DSM 43021  Bacteria  normal  0.324396  normal 
 
 
-
 
NC_008530  LGAS_1857  N-acetylmuramic acid-6-phosphate etherase  35.92 
 
 
297 aa  154  1e-36  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.00000411565  hitchhiker  0.0000000817589 
 
 
-
 
NC_008709  Ping_1065  N-acetylmuramic acid-6-phosphate etherase  32.99 
 
 
299 aa  154  1e-36  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1899  N-acetylmuramic acid-6-phosphate etherase  32.42 
 
 
295 aa  154  2e-36  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0987  N-acetylmuramic acid-6-phosphate etherase  33.45 
 
 
294 aa  154  2e-36  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0335  N-acetylmuramic acid-6-phosphate etherase  32.64 
 
 
303 aa  154  2e-36  Haemophilus somnus 129PT  Bacteria  normal  0.130147  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0732  N-acetylmuramic acid-6-phosphate etherase  34.7 
 
 
294 aa  154  2e-36  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00595  glucokinase regulatory-like protein  34.72 
 
 
331 aa  154  2e-36  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00989  N-acetylmuramic acid-6-phosphate etherase  34.72 
 
 
308 aa  154  2e-36  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011726  PCC8801_2034  N-acetylmuramic acid-6-phosphate etherase  35.05 
 
 
306 aa  153  2.9999999999999998e-36  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_3685  N-acetylmuramic acid-6-phosphate etherase  37.55 
 
 
267 aa  153  2.9999999999999998e-36  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.137366 
 
 
-
 
NC_009632  SaurJH1_0181  N-acetylmuramic acid-6-phosphate etherase  33.96 
 
 
298 aa  153  2.9999999999999998e-36  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4459  N-acetylmuramic acid-6-phosphate etherase  33.11 
 
 
294 aa  153  2.9999999999999998e-36  Bacillus cereus G9842  Bacteria  normal  normal  0.772989 
 
 
-
 
NC_013132  Cpin_6538  N-acetylmuramic acid-6-phosphate etherase  34.59 
 
 
270 aa  152  4e-36  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.130206  normal  0.393534 
 
 
-
 
NC_013161  Cyan8802_2060  N-acetylmuramic acid-6-phosphate etherase  35.05 
 
 
306 aa  153  4e-36  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_004409  N-acetylmuramic acid 6-phosphate etherase  36.72 
 
 
309 aa  152  5e-36  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_0340  N-acetylmuramic acid-6-phosphate etherase  33.33 
 
 
307 aa  152  8.999999999999999e-36  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_008819  NATL1_09881  N-acetylmuramic acid-6-phosphate etherase  37.72 
 
 
310 aa  151  1e-35  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.165644 
 
 
-
 
NC_009487  SaurJH9_0176  N-acetylmuramic acid-6-phosphate etherase  33.58 
 
 
298 aa  151  1e-35  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0913  N-acetylmuramic acid-6-phosphate etherase  33.11 
 
 
294 aa  150  2e-35  Bacillus cereus ATCC 10987  Bacteria  normal  0.163609  n/a   
 
 
-
 
NC_014210  Ndas_0474  sugar isomerase (SIS)  37.46 
 
 
337 aa  151  2e-35  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.850822  normal 
 
 
-
 
NC_007513  Syncc9902_1095  N-acetylmuramic acid-6-phosphate etherase  40.59 
 
 
316 aa  150  3e-35  Synechococcus sp. CC9902  Bacteria  decreased coverage  0.00246557  n/a   
 
 
-
 
NC_013061  Phep_3780  N-acetylmuramic acid-6-phosphate etherase  34.73 
 
 
268 aa  149  6e-35  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_3047  N-acetylmuramic acid-6-phosphate etherase  36.84 
 
 
297 aa  149  7e-35  Enterobacter sp. 638  Bacteria  normal  normal  0.0580573 
 
 
-
 
NC_010498  EcSMS35_2583  N-acetylmuramic acid-6-phosphate etherase  37.11 
 
 
298 aa  148  9e-35  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_3658  N-acetylmuramic acid-6-phosphate etherase  37.5 
 
 
298 aa  148  9e-35  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1512  glucokinase regulatory-like protein  33.11 
 
 
307 aa  147  1.0000000000000001e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010003  Pmob_0485  N-acetylmuramic acid-6-phosphate etherase  31.12 
 
 
298 aa  148  1.0000000000000001e-34  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_1541  glucokinase regulatory-like protein  34.64 
 
 
291 aa  148  1.0000000000000001e-34  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1079  N-acetylmuramic acid-6-phosphate etherase  35.07 
 
 
313 aa  147  2.0000000000000003e-34  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0620  N-acetylmuramic acid-6-phosphate etherase  37.4 
 
 
301 aa  147  2.0000000000000003e-34  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_3065  N-acetylmuramic acid-6-phosphate etherase  33.59 
 
 
270 aa  146  3e-34  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_1233  glucokinase regulatory-like protein  37.11 
 
 
298 aa  146  4.0000000000000006e-34  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_1251  N-acetylmuramic acid-6-phosphate etherase  37.11 
 
 
298 aa  146  4.0000000000000006e-34  Escherichia coli ATCC 8739  Bacteria  normal  0.674779  normal  0.258404 
 
 
-
 
NC_009800  EcHS_A2564  N-acetylmuramic acid-6-phosphate etherase  37.11 
 
 
298 aa  146  4.0000000000000006e-34  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4977  N-acetylmuramic acid-6-phosphate etherase  35.07 
 
 
306 aa  146  4.0000000000000006e-34  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.889603 
 
 
-
 
NC_010658  SbBS512_E2800  N-acetylmuramic acid-6-phosphate etherase  37.11 
 
 
298 aa  145  5e-34  Shigella boydii CDC 3083-94  Bacteria  normal  0.505825  n/a   
 
 
-
 
NC_009801  EcE24377A_2714  N-acetylmuramic acid-6-phosphate etherase  37.11 
 
 
298 aa  146  5e-34  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02328  N-acetylmuramic acid-6-phosphate etherase  37.11 
 
 
298 aa  145  6e-34  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02289  hypothetical protein  37.11 
 
 
298 aa  145  6e-34  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2814  N-acetylmuramic acid-6-phosphate etherase  36.33 
 
 
297 aa  145  6e-34  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.728479 
 
 
-
 
NC_011205  SeD_A2949  N-acetylmuramic acid-6-phosphate etherase  35.96 
 
 
297 aa  145  6e-34  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001001  N-acetylmuramic acid 6-phosphate etherase  34.63 
 
 
300 aa  145  7.0000000000000006e-34  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B2733  N-acetylmuramic acid-6-phosphate etherase  36.33 
 
 
297 aa  145  7.0000000000000006e-34  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2837  N-acetylmuramic acid-6-phosphate etherase  36.33 
 
 
297 aa  145  1e-33  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.718204 
 
 
-
 
NC_013730  Slin_5916  glucokinase regulatory-like protein  40.83 
 
 
270 aa  145  1e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2490  N-acetylmuramic acid-6-phosphate etherase  34.96 
 
 
270 aa  145  1e-33  Flavobacterium johnsoniae UW101  Bacteria  hitchhiker  0.000000186214  n/a   
 
 
-
 
NC_011080  SNSL254_A2774  N-acetylmuramic acid-6-phosphate etherase  36.33 
 
 
297 aa  145  1e-33  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010644  Emin_1529  glucokinase regulatory-like protein  32.87 
 
 
295 aa  144  2e-33  Elusimicrobium minutum Pei191  Bacteria  hitchhiker  0.00174969  unclonable  2.72637e-19 
 
 
-
 
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