5 homologs were found in PanDaTox collection
for query gene PC1_2196 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012917  PC1_2196  type III secretion protein  100 
 
 		 210 aa  419  1e-116  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_1900  type III secretion protein  41.45 
 
 		 187 aa  132  3e-30  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_1196  type III secretion protein HrpD  34.78 
 
 		 175 aa  61.2  0.00000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.10264 
 
 
-
 
NC_009439  Pmen_0027  hypothetical protein  29.26 
 
 		 177 aa  54.7  0.000001  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_1385  type III secretion protein HrpD  34.4 
 
 		 176 aa  53.9  0.000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
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