Gene PSPTO_1385 details

Gene Information

• Locus tag: PSPTO_1385
• Symbol: hrpD
• ID: 1183021
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 1527004
• End bp: 1527534
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637392757
• Product: type III secretion protein HrpD
• Protein accession: NP_791212
• Protein GI: 28868593

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGAGCC TTTCTGCCGA GGATCACTGG ATTCACTGGT GGTGCAACCC CTGGCAGTGG 
GCACATTCGG AGTGGCATGA CCGATTCGCC AACGCTCGTG GGTTATCGGT CAGTGACTGC 
GATGCGCTCA TGGCCAGCCG TCATGGCGTG TTTCTGCAGA GTCTGGGCAT TGACCCGGCT 
CAGCCGCCAG CGCCCGCGGA ACCGGTGCTG CGCTGGTTGG CGCTGACGCC CTCGCAGCGT 
GAGCAGGCGC TAAGCCTGGC GCAGTGCATC TGCTTCTCCC GTAACGAAAG CGACGGCCCT 
GACGGTCAAT GGTGCTGGGG GTTGACCAAA GCGCTGCGCC CCGGTGTCTG GCTGGAGTTT 
GAACACGAGG ACGCGCGTCT TCTGCTGGGC GCCTGGCTTG GGCCGCAATA CTGGTCGCGA 
CTGTGTCTGG AGTGGCCGCC CAATGAAGTG CCCGACACCC CCGGCAAGGC ACCCGAAAAC 
AAACTTCAGG CGTTATGGCA GGCCATCATG TGGCGCGTCA CGGCTGCCTG A 

 

Protein sequence

MMSLSAEDHW IHWWCNPWQW AHSEWHDRFA NARGLSVSDC DALMASRHGV FLQSLGIDPA 
QPPAPAEPVL RWLALTPSQR EQALSLAQCI CFSRNESDGP DGQWCWGLTK ALRPGVWLEF 
EHEDARLLLG AWLGPQYWSR LCLEWPPNEV PDTPGKAPEN KLQALWQAIM WRVTAA