More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_4596 on replicon NC_012857
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012857  Rpic12D_4596  Acyl-CoA dehydrogenase type 2 domain protein  100 
 
 
402 aa  796    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4462  Acyl-CoA dehydrogenase type 2 domain  100 
 
 
402 aa  796    Ralstonia pickettii 12J  Bacteria  normal  normal  0.542965 
 
 
-
 
NC_007973  Rmet_2217  Acyl-CoA dehydrogenase  71.25 
 
 
402 aa  556  1e-157  Cupriavidus metallidurans CH34  Bacteria  normal  0.0777616  normal  0.101595 
 
 
-
 
NC_007348  Reut_B5046  Acyl-CoA dehydrogenase, C-terminal  68.58 
 
 
402 aa  519  1e-146  Ralstonia eutropha JMP134  Bacteria  normal  0.721222  n/a   
 
 
-
 
NC_010552  BamMC406_4154  acyl-CoA dehydrogenase domain-containing protein  65.23 
 
 
440 aa  513  1e-144  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.233252 
 
 
-
 
NC_008391  Bamb_3681  acyl-CoA dehydrogenase domain-containing protein  65.23 
 
 
442 aa  508  1e-143  Burkholderia ambifaria AMMD  Bacteria  normal  0.902105  normal 
 
 
-
 
NC_012791  Vapar_3873  Acyl-CoA dehydrogenase type 2 domain protein  63.39 
 
 
411 aa  483  1e-135  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3260  acyl-CoA dehydrogenase domain-containing protein  65.21 
 
 
459 aa  482  1e-135  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4333  acyl-CoA dehydrogenase type 2  62.34 
 
 
440 aa  474  1e-133  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.619225  normal  0.220534 
 
 
-
 
NC_008061  Bcen_4109  Acyl-CoA dehydrogenase, type 2-like  65.16 
 
 
452 aa  468  1.0000000000000001e-131  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.381793  n/a   
 
 
-
 
NC_008543  Bcen2424_4257  acyl-CoA dehydrogenase type 2  65.16 
 
 
452 aa  468  1.0000000000000001e-131  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00125865  normal  0.295507 
 
 
-
 
NC_007511  Bcep18194_B1754  Acyl-CoA dehydrogenase  64.89 
 
 
454 aa  461  1e-129  Burkholderia sp. 383  Bacteria  normal  normal  0.0688656 
 
 
-
 
NC_010581  Bind_0523  acyl-CoA dehydrogenase type 2  56.3 
 
 
407 aa  407  1.0000000000000001e-112  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2538  acyl-CoA dehydrogenase type 2  53.47 
 
 
378 aa  380  1e-104  Pseudomonas putida GB-1  Bacteria  normal  0.844573  decreased coverage  0.00557828 
 
 
-
 
NC_007005  Psyr_3604  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  49.38 
 
 
393 aa  376  1e-103  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.339437 
 
 
-
 
NC_008688  Pden_5014  acyl-CoA dehydrogenase type 2  52.6 
 
 
384 aa  376  1e-103  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3226  acyl-CoA dehydrogenase-related protein  55.01 
 
 
380 aa  375  1e-102  Pseudomonas putida KT2440  Bacteria  normal  0.690171  normal 
 
 
-
 
NC_009485  BBta_1981  putative acyl-CoA dehydrogenase  51.95 
 
 
388 aa  372  1e-102  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1790  acyl-CoA dehydrogenase family protein  48.26 
 
 
397 aa  368  1e-101  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1390  Acyl-CoA dehydrogenase type 2 domain protein  53.93 
 
 
384 aa  370  1e-101  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00428618  n/a   
 
 
-
 
NC_010725  Mpop_4897  acyl-CoA dehydrogenase domain protein  54.36 
 
 
381 aa  369  1e-101  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2659  acyl-CoA dehydrogenase type 2  51.8 
 
 
390 aa  370  1e-101  Caulobacter sp. K31  Bacteria  normal  normal  0.387509 
 
 
-
 
NC_012560  Avin_31100  Acyl-CoA dehydrogenase family protein  51.69 
 
 
396 aa  365  1e-100  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2670  Acyl-CoA dehydrogenase type 2 domain protein  51.16 
 
 
389 aa  367  1e-100  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_012560  Avin_21570  Acyl-CoA dehydrogenase family protein  51.25 
 
 
400 aa  358  7e-98  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1170  acyl-CoA dehydrogenase domain-containing protein  53.42 
 
 
381 aa  358  9.999999999999999e-98  Methylobacterium extorquens PA1  Bacteria  normal  0.665446  normal  0.0188326 
 
 
-
 
NC_011757  Mchl_1330  acyl-CoA dehydrogenase domain protein  53.68 
 
 
381 aa  356  3.9999999999999996e-97  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.135454  normal  0.523473 
 
 
-
 
NC_008463  PA14_30500  putative acyl-CoA dehydrogenase  51.78 
 
 
383 aa  341  1e-92  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3307  putative acyl-CoA dehydrogenase  48.6 
 
 
394 aa  340  2e-92  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2770  ccyl-CoA dehydrogenase type 2 domain protein  48.49 
 
 
406 aa  325  1e-87  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.271017  normal 
 
 
-
 
NC_009621  Smed_5653  acyl-CoA dehydrogenase type 2  45.34 
 
 
410 aa  318  9e-86  Sinorhizobium medicae WSM419  Bacteria  normal  0.329683  normal  0.865966 
 
 
-
 
NC_010505  Mrad2831_4840  acyl-CoA dehydrogenase type 2  55.11 
 
 
381 aa  317  2e-85  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.910203 
 
 
-
 
NC_009485  BBta_5139  putative acyl-CoA dehydrogenase  44.27 
 
 
399 aa  306  5.0000000000000004e-82  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0630041 
 
 
-
 
NC_010581  Bind_1847  acyl-CoA dehydrogenase type 2  42.78 
 
 
382 aa  302  6.000000000000001e-81  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.25699  normal 
 
 
-
 
NC_009485  BBta_2584  putative acyl-CoA dehydrogenase  43.17 
 
 
398 aa  283  3.0000000000000004e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0375347 
 
 
-
 
NC_009921  Franean1_2020  acyl-CoA dehydrogenase type 2  40.97 
 
 
394 aa  253  4.0000000000000004e-66  Frankia sp. EAN1pec  Bacteria  normal  0.692035  normal  0.294025 
 
 
-
 
NC_011981  Avi_7179  acyl-CoA dehydrogenase  39.29 
 
 
394 aa  245  9.999999999999999e-64  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3756  acyl-CoA dehydrogenase type 2  38.68 
 
 
418 aa  232  1e-59  Frankia sp. EAN1pec  Bacteria  normal  0.326681  normal 
 
 
-
 
NC_013093  Amir_4313  acyl-CoA dehydrogenase type 2 domain protein  40.15 
 
 
397 aa  229  8e-59  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1183  Acyl-CoA dehydrogenase type 2 domain protein  34.18 
 
 
390 aa  226  7e-58  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011988  Avi_5178  acyl-CoA dehydrogenase-related protein  36.58 
 
 
393 aa  213  2.9999999999999995e-54  Agrobacterium vitis S4  Bacteria  normal  0.897204  n/a   
 
 
-
 
NC_007777  Francci3_2419  Acyl-CoA dehydrogenase  41.42 
 
 
332 aa  213  4.9999999999999996e-54  Frankia sp. CcI3  Bacteria  normal  0.238624  normal  0.291589 
 
 
-
 
NC_009523  RoseRS_0478  acyl-CoA dehydrogenase domain-containing protein  36.25 
 
 
396 aa  204  2e-51  Roseiflexus sp. RS-1  Bacteria  normal  0.859047  normal 
 
 
-
 
NC_009767  Rcas_0150  acyl-CoA dehydrogenase domain-containing protein  35.86 
 
 
394 aa  193  4e-48  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0955  Acyl-CoA dehydrogenase type 2 domain protein  35.5 
 
 
398 aa  186  5e-46  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2142  putative acyl-CoA dehydrogenase, short-chain specific  30.39 
 
 
382 aa  171  3e-41  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK2818  acyl-CoA dehydrogenase, short-chain specific  30.13 
 
 
382 aa  169  8e-41  Bacillus cereus E33L  Bacteria  normal  0.149479  n/a   
 
 
-
 
NC_011725  BCB4264_A3094  putative acyl-CoA dehydrogenase, short-chain specific  30.39 
 
 
382 aa  168  1e-40  Bacillus cereus B4264  Bacteria  normal  0.952201  n/a   
 
 
-
 
NC_011658  BCAH187_A3128  putative acyl-CoA dehydrogenase, short-chain specific  30.13 
 
 
382 aa  169  1e-40  Bacillus cereus AH187  Bacteria  hitchhiker  0.000407188  n/a   
 
 
-
 
NC_005945  BAS2889  acyl-CoA dehydrogenase, short-chain specific  30.13 
 
 
382 aa  168  2e-40  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00742766  n/a   
 
 
-
 
NC_005957  BT9727_2857  acyl-CoA dehydrogenase, short-chain specific  30.13 
 
 
382 aa  167  2e-40  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.25076  n/a   
 
 
-
 
NC_007530  GBAA_3105  acyl-CoA dehydrogenase, short-chain specific  30.13 
 
 
382 aa  168  2e-40  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.362062  n/a   
 
 
-
 
NC_011773  BCAH820_3109  putative acyl-CoA dehydrogenase, short-chain specific  30.13 
 
 
382 aa  167  2e-40  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_2881  acyl-CoA dehydrogenase type 2  30.71 
 
 
382 aa  167  2.9999999999999998e-40  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.255861  n/a   
 
 
-
 
NC_003909  BCE_3126  acyl-CoA dehydrogenase, short-chain specific, putative  30.03 
 
 
382 aa  164  3e-39  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00757934  n/a   
 
 
-
 
NC_013411  GYMC61_2547  Acyl-CoA dehydrogenase type 2 domain protein  32.81 
 
 
392 aa  162  8.000000000000001e-39  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_2066  acyl-CoA dehydrogenase type 2  29.05 
 
 
384 aa  161  2e-38  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.335702  n/a   
 
 
-
 
NC_009487  SaurJH9_2310  acyl-CoA dehydrogenase type 2  29.56 
 
 
384 aa  158  1e-37  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.154104  n/a   
 
 
-
 
NC_009632  SaurJH1_2352  acyl-CoA dehydrogenase type 2  29.56 
 
 
384 aa  158  1e-37  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.657423  n/a   
 
 
-
 
NC_002976  SERP1866  acyl-CoA dehydrogenase-related protein  28.72 
 
 
381 aa  154  2e-36  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1626  Acyl-CoA dehydrogenase type 2 domain protein  30.91 
 
 
387 aa  147  4.0000000000000006e-34  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1231  Acyl-CoA dehydrogenase, type 2-like protein  36.49 
 
 
384 aa  141  1.9999999999999998e-32  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.279686  normal 
 
 
-
 
NC_008254  Meso_2091  Acyl-CoA dehydrogenase, type 2-like  30.1 
 
 
389 aa  120  4.9999999999999996e-26  Chelativorans sp. BNC1  Bacteria  normal  0.424709  n/a   
 
 
-
 
NC_009972  Haur_2304  acyl-CoA dehydrogenase type 2  29.88 
 
 
392 aa  116  7.999999999999999e-25  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0799931  n/a   
 
 
-
 
NC_009953  Sare_4695  acyl-CoA dehydrogenase type 2  29.65 
 
 
387 aa  104  2e-21  Salinispora arenicola CNS-205  Bacteria  normal  0.46169  normal  0.258533 
 
 
-
 
NC_007517  Gmet_3306  Acyl-CoA dehydrogenase-like  25.71 
 
 
380 aa  103  4e-21  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_0732  acyl-CoA dehydrogenase domain protein  29.04 
 
 
379 aa  103  5e-21  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1399  acyl-CoA dehydrogenase domain-containing protein  26.61 
 
 
385 aa  103  6e-21  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1570  acyl-CoA dehydrogenase domain protein  26.7 
 
 
383 aa  103  8e-21  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010525  Tneu_0539  acyl-CoA dehydrogenase domain-containing protein  26.3 
 
 
405 aa  102  9e-21  Thermoproteus neutrophilus V24Sta  Archaea  normal  hitchhiker  0.00283131 
 
 
-
 
NC_009253  Dred_1490  butyryl-CoA dehydrogenase  26.13 
 
 
378 aa  102  1e-20  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3775  acyl-CoA dehydrogenase domain protein  27.06 
 
 
386 aa  101  2e-20  Haliangium ochraceum DSM 14365  Bacteria  normal  0.212433  normal  0.155443 
 
 
-
 
NC_013205  Aaci_2056  acyl-CoA dehydrogenase domain protein  24.86 
 
 
377 aa  101  2e-20  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.232194  n/a   
 
 
-
 
NC_009665  Shew185_1491  acyl-CoA dehydrogenase domain-containing protein  26.36 
 
 
385 aa  100  3e-20  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1527  acyl-CoA dehydrogenase domain-containing protein  26.36 
 
 
385 aa  100  3e-20  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_0733  acyl-CoA dehydrogenase domain protein  26.91 
 
 
377 aa  100  4e-20  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2854  acyl-CoA dehydrogenase domain protein  26.36 
 
 
385 aa  100  7e-20  Shewanella baltica OS223  Bacteria  normal  0.715109  hitchhiker  0.0000000460252 
 
 
-
 
NC_009052  Sbal_1497  acyl-CoA dehydrogenase domain-containing protein  26.36 
 
 
385 aa  100  7e-20  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2769  acyl-CoA dehydrogenase domain-containing protein  25.93 
 
 
385 aa  99.8  8e-20  Shewanella sp. ANA-3  Bacteria  normal  normal  0.329604 
 
 
-
 
NC_009380  Strop_4265  acyl-CoA dehydrogenase type 2  29.79 
 
 
387 aa  99.4  1e-19  Salinispora tropica CNB-440  Bacteria  normal  normal  0.184931 
 
 
-
 
NC_008322  Shewmr7_2662  acyl-CoA dehydrogenase domain-containing protein  25.66 
 
 
385 aa  97.8  3e-19  Shewanella sp. MR-7  Bacteria  normal  0.553599  normal 
 
 
-
 
NC_008321  Shewmr4_2595  acyl-CoA dehydrogenase domain-containing protein  25.66 
 
 
385 aa  97.1  5e-19  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.000133331 
 
 
-
 
NC_008700  Sama_1377  butyryl-CoA dehydrogenase  26.61 
 
 
385 aa  97.1  5e-19  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0267981 
 
 
-
 
NC_008554  Sfum_3931  acyl-CoA dehydrogenase domain-containing protein  24.51 
 
 
400 aa  96.7  6e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.543045 
 
 
-
 
NC_008345  Sfri_1340  butyryl-CoA dehydrogenase  26.19 
 
 
385 aa  96.7  7e-19  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.92296  n/a   
 
 
-
 
NC_009565  TBFG_13303  acyl-CoA dehydrogenase fadE25  25.19 
 
 
389 aa  96.7  7e-19  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_1679  acyl-CoA dehydrogenase family protein  25.45 
 
 
385 aa  95.9  1e-18  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_1173  Acyl-CoA dehydrogenase type 2 domain protein  27.75 
 
 
383 aa  95.9  1e-18  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0402  acyl-CoA dehydrogenase domain-containing protein  24.46 
 
 
380 aa  95.5  1e-18  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1941  butyryl-CoA dehydrogenase  26.1 
 
 
385 aa  95.5  2e-18  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0788  butyryl-CoA dehydrogenase  24.24 
 
 
380 aa  95.1  2e-18  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1413  Acyl-CoA dehydrogenase-like  27.88 
 
 
397 aa  94.4  3e-18  Burkholderia sp. 383  Bacteria  normal  0.465411  normal 
 
 
-
 
NC_008009  Acid345_1131  butyryl-CoA dehydrogenase  21.73 
 
 
392 aa  94.7  3e-18  Candidatus Koribacter versatilis Ellin345  Bacteria  hitchhiker  0.00519609  hitchhiker  0.000110962 
 
 
-
 
NC_011146  Gbem_3575  acyl-CoA dehydrogenase domain protein  25.26 
 
 
380 aa  94  4e-18  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008701  Pisl_1436  butyryl-CoA dehydrogenase  24.61 
 
 
410 aa  94.4  4e-18  Pyrobaculum islandicum DSM 4184  Archaea  normal  0.170652  hitchhiker  0.00553945 
 
 
-
 
NC_007951  Bxe_A4257  putative acyl-CoA dehydrogenase  26.68 
 
 
376 aa  93.6  5e-18  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.217203 
 
 
-
 
NC_009675  Anae109_4277  acyl-CoA dehydrogenase domain-containing protein  25.32 
 
 
579 aa  92.8  1e-17  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.943677  normal 
 
 
-
 
NC_009901  Spea_2781  acyl-CoA dehydrogenase domain-containing protein  25.66 
 
 
385 aa  92.8  1e-17  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1669  butyryl-CoA dehydrogenase  25.53 
 
 
385 aa  90.9  3e-17  Shewanella loihica PV-4  Bacteria  normal  0.260436  hitchhiker  0.00156032 
 
 
-
 
NC_008699  Noca_0241  acyl-CoA dehydrogenase domain-containing protein  25.26 
 
 
389 aa  91.3  3e-17  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
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