More than 300 homologs were found in PanDaTox collection
for query gene RPD_3618 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_7132  putative acyl-CoA dehydrogenase  82.26 
 
 
594 aa  948    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3618  acyl-CoA dehydrogenase-like  100 
 
 
618 aa  1251    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.288668  normal  0.838004 
 
 
-
 
NC_011004  Rpal_1899  acyl-CoA dehydrogenase domain protein  88.24 
 
 
595 aa  1065    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5893  acyl-CoA dehydrogenase-like protein  52.87 
 
 
598 aa  541  9.999999999999999e-153  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5437  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  52.74 
 
 
597 aa  525  1e-148  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_3790  acyl-CoA dehydrogenase  50.54 
 
 
596 aa  519  1e-146  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1884  acyl-CoA dehydrogenase domain-containing protein  51.01 
 
 
581 aa  517  1.0000000000000001e-145  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.645815 
 
 
-
 
NC_009656  PSPA7_1549  putative acyl-CoA dehydrogenase  47.92 
 
 
575 aa  514  1e-144  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2443  acyl-CoA dehydrogenase domain-containing protein  50 
 
 
567 aa  507  9.999999999999999e-143  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_17810  putative acyl-CoA dehydrogenase  47.4 
 
 
575 aa  508  9.999999999999999e-143  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0658  acyl-CoA dehydrogenase domain protein  51.85 
 
 
564 aa  502  1e-141  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1841  acyl-CoA dehydrogenase domain-containing protein  53.08 
 
 
571 aa  500  1e-140  Acidovorax citrulli AAC00-1  Bacteria  normal  0.482518  normal  0.87891 
 
 
-
 
NC_012791  Vapar_2096  acyl-CoA dehydrogenase domain protein  50.91 
 
 
569 aa  500  1e-140  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2781  acyl-CoA dehydrogenase domain-containing protein  49.82 
 
 
597 aa  493  9.999999999999999e-139  Burkholderia pseudomallei 1710b  Bacteria  normal  0.44157  n/a   
 
 
-
 
NC_009076  BURPS1106A_2703  acyl-CoA dehydrogenase domain-containing protein  49.82 
 
 
595 aa  493  9.999999999999999e-139  Burkholderia pseudomallei 1106a  Bacteria  normal  0.3572  n/a   
 
 
-
 
NC_009074  BURPS668_2648  Acyl-CoA dehydrogenases  49.82 
 
 
599 aa  493  9.999999999999999e-139  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1755  acyl-CoA dehydrogenase domain-containing protein  49.63 
 
 
597 aa  491  1e-137  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1537  acyl-CoA dehydrogenase domain-containing protein  49.63 
 
 
597 aa  491  1e-137  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3054  acyl-CoA dehydrogenase domain-containing protein  49.63 
 
 
597 aa  491  1e-137  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_1111  acyl-CoA dehydrogenase domain-containing protein  49.38 
 
 
583 aa  486  1e-136  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0714582  normal 
 
 
-
 
NC_012791  Vapar_4971  acyl-CoA dehydrogenase domain protein  50.74 
 
 
574 aa  486  1e-136  Variovorax paradoxus S110  Bacteria  normal  0.142343  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2264  acyl-CoA dehydrogenase domain-containing protein  49.45 
 
 
597 aa  487  1e-136  Burkholderia mallei SAVP1  Bacteria  normal  0.220128  n/a   
 
 
-
 
NC_010681  Bphyt_1435  acyl-CoA dehydrogenase domain protein  46.36 
 
 
588 aa  484  1e-135  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_2178  acyl-CoA dehydrogenase domain-containing protein  48.6 
 
 
583 aa  482  1e-135  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I1833  acyl-CoA dehydrogenase domain-containing protein  48.1 
 
 
593 aa  485  1e-135  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A3006  putative acyl-CoA dehydrogenase  46.6 
 
 
587 aa  482  1e-135  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1542  acyl-CoA dehydrogenase domain protein  49.73 
 
 
587 aa  481  1e-134  Ralstonia pickettii 12D  Bacteria  normal  normal  0.212711 
 
 
-
 
NC_007510  Bcep18194_A5469  Acyl-CoA dehydrogenase  48.84 
 
 
583 aa  481  1e-134  Burkholderia sp. 383  Bacteria  hitchhiker  0.00397028  normal 
 
 
-
 
NC_008062  Bcen_5917  acyl-CoA dehydrogenase-like  48.42 
 
 
583 aa  482  1e-134  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2160  acyl-CoA dehydrogenase domain-containing protein  48.42 
 
 
583 aa  482  1e-134  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2071  acyl-CoA dehydrogenase domain-containing protein  48.11 
 
 
584 aa  473  1e-132  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_2197  acyl-CoA dehydrogenase domain-containing protein  48.28 
 
 
584 aa  472  1e-132  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2324  acyl-CoA dehydrogenase domain protein  37.73 
 
 
560 aa  267  4e-70  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013922  Nmag_1843  acyl-CoA dehydrogenase domain protein  33.78 
 
 
625 aa  262  1e-68  Natrialba magadii ATCC 43099  Archaea  normal  0.0506701  n/a   
 
 
-
 
NC_009077  Mjls_4258  acyl-CoA dehydrogenase domain-containing protein  34.34 
 
 
582 aa  248  2e-64  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0342919 
 
 
-
 
NC_008146  Mmcs_4028  acyl-CoA dehydrogenase-like protein  34.34 
 
 
582 aa  248  2e-64  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4103  acyl-CoA dehydrogenase domain-containing protein  34.34 
 
 
582 aa  248  2e-64  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13831  acyl-CoA dehydrogenase fadE35  36.11 
 
 
585 aa  237  4e-61  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3002  acyl-CoA dehydrogenase domain-containing protein  39 
 
 
560 aa  236  8e-61  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00428288  normal  0.624214 
 
 
-
 
NC_013595  Sros_6139  acyl-CoA dehydrogenase  35.27 
 
 
584 aa  235  2.0000000000000002e-60  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0357079  normal  0.259565 
 
 
-
 
NC_013159  Svir_38660  acyl-CoA dehydrogenase  37.8 
 
 
548 aa  234  2.0000000000000002e-60  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_0155  acyl-CoA dehydrogenase domain protein  34.64 
 
 
645 aa  234  4.0000000000000004e-60  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_014165  Tbis_2251  acyl-CoA dehydrogenase domain-containing protein  35.69 
 
 
534 aa  233  9e-60  Thermobispora bispora DSM 43833  Bacteria  normal  0.141599  normal  0.0458056 
 
 
-
 
NC_009767  Rcas_4173  acyl-CoA dehydrogenase domain-containing protein  35.95 
 
 
573 aa  231  3e-59  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.105582  hitchhiker  0.0000773484 
 
 
-
 
NC_013595  Sros_6703  acyl-CoA dehydrogenase  38.18 
 
 
539 aa  231  4e-59  Streptosporangium roseum DSM 43021  Bacteria  normal  0.619428  normal  0.598505 
 
 
-
 
NC_013501  Rmar_2208  acyl-CoA dehydrogenase domain protein  36.36 
 
 
558 aa  230  5e-59  Rhodothermus marinus DSM 4252  Bacteria  normal  0.341885  n/a   
 
 
-
 
NC_009523  RoseRS_4311  acyl-CoA dehydrogenase domain-containing protein  35.2 
 
 
558 aa  229  1e-58  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2819  acyl-CoA dehydrogenase domain protein  36.67 
 
 
543 aa  227  5.0000000000000005e-58  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.708717  normal  0.776174 
 
 
-
 
NC_008786  Veis_2832  acyl-CoA dehydrogenase domain-containing protein  36.91 
 
 
559 aa  226  7e-58  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.716167  normal  0.258614 
 
 
-
 
NC_013441  Gbro_4257  acyl-CoA dehydrogenase domain protein  34.35 
 
 
559 aa  224  4.9999999999999996e-57  Gordonia bronchialis DSM 43247  Bacteria  normal  0.175294  n/a   
 
 
-
 
NC_007760  Adeh_3024  Acyl-CoA dehydrogenase, type 1  37.94 
 
 
559 aa  223  7e-57  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0869266  n/a   
 
 
-
 
NC_009380  Strop_3981  acyl-CoA dehydrogenase domain-containing protein  36.59 
 
 
542 aa  222  1.9999999999999999e-56  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_1851  acyl-CoA dehydrogenase domain protein  35.65 
 
 
557 aa  221  3e-56  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.388874 
 
 
-
 
NC_009719  Plav_2837  acyl-CoA dehydrogenase domain-containing protein  32.96 
 
 
563 aa  219  8.999999999999998e-56  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.218018  normal 
 
 
-
 
NC_009656  PSPA7_1136  putative acyl-CoA dehydrogenase  34.42 
 
 
549 aa  219  1e-55  Pseudomonas aeruginosa PA7  Bacteria  normal  0.113236  n/a   
 
 
-
 
NC_013510  Tcur_1782  acyl-CoA dehydrogenase domain protein  38.55 
 
 
543 aa  218  2.9999999999999998e-55  Thermomonospora curvata DSM 43183  Bacteria  normal  0.121975  n/a   
 
 
-
 
NC_006369  lpl0836  hypothetical protein  31.14 
 
 
567 aa  217  4e-55  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_12450  putative acyl-CoA dehydrogenase  34.42 
 
 
549 aa  218  4e-55  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.744649  normal 
 
 
-
 
NC_013131  Caci_1752  acyl-CoA dehydrogenase domain protein  36.7 
 
 
550 aa  217  5.9999999999999996e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.907741  normal 
 
 
-
 
NC_009953  Sare_4366  acyl-CoA dehydrogenase domain-containing protein  36.57 
 
 
542 aa  217  5.9999999999999996e-55  Salinispora arenicola CNS-205  Bacteria  normal  0.128811  hitchhiker  0.00458691 
 
 
-
 
NC_006368  lpp0865  hypothetical protein  32.94 
 
 
567 aa  216  9.999999999999999e-55  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_011891  A2cp1_3222  acyl-CoA dehydrogenase domain protein  37.88 
 
 
559 aa  216  9.999999999999999e-55  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3121  acyl-CoA dehydrogenase domain protein  37.65 
 
 
559 aa  215  1.9999999999999998e-54  Anaeromyxobacter sp. K  Bacteria  normal  0.362928  n/a   
 
 
-
 
NC_009921  Franean1_6434  acyl-CoA dehydrogenase domain-containing protein  36.12 
 
 
572 aa  215  1.9999999999999998e-54  Frankia sp. EAN1pec  Bacteria  normal  0.441597  normal  0.0443202 
 
 
-
 
NC_012791  Vapar_2916  acyl-CoA dehydrogenase domain protein  34.64 
 
 
546 aa  214  3.9999999999999995e-54  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3912  acyl-CoA dehydrogenase-like  35.7 
 
 
548 aa  213  7.999999999999999e-54  Pseudoalteromonas atlantica T6c  Bacteria  decreased coverage  0.0000271467  n/a   
 
 
-
 
NC_013093  Amir_6225  acyl-CoA dehydrogenase domain protein  36.74 
 
 
529 aa  213  1e-53  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1360  acyl-CoA dehydrogenase-like  34.47 
 
 
543 aa  212  2e-53  Chelativorans sp. BNC1  Bacteria  normal  0.165599  n/a   
 
 
-
 
NC_008781  Pnap_1847  acyl-CoA dehydrogenase domain-containing protein  35.05 
 
 
550 aa  210  7e-53  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.440141  normal  0.493968 
 
 
-
 
NC_013947  Snas_5650  acyl-CoA dehydrogenase domain-containing protein  36.78 
 
 
542 aa  209  1e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.108739  normal  0.35349 
 
 
-
 
NC_009338  Mflv_5086  acyl-CoA dehydrogenase domain-containing protein  37.29 
 
 
552 aa  209  1e-52  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.480357  normal  0.429273 
 
 
-
 
NC_009485  BBta_4724  isovaleryl CoA dehydrogenase (adaptive response to DNA-methylation damage)  34.45 
 
 
547 aa  208  3e-52  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1003  acyl-CoA dehydrogenase domain-containing protein  37.65 
 
 
551 aa  207  4e-52  Mycobacterium sp. JLS  Bacteria  normal  normal  0.265858 
 
 
-
 
NC_011989  Avi_1763  acyl-CoA dehydrogenase  33.93 
 
 
547 aa  207  5e-52  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0975  acyl-CoA dehydrogenase-like protein  37.65 
 
 
551 aa  207  5e-52  Mycobacterium sp. MCS  Bacteria  normal  0.315485  n/a   
 
 
-
 
NC_008705  Mkms_0993  acyl-CoA dehydrogenase domain-containing protein  37.65 
 
 
551 aa  207  5e-52  Mycobacterium sp. KMS  Bacteria  normal  normal  0.619354 
 
 
-
 
NC_007777  Francci3_0369  acyl-CoA dehydrogenase-like  35.6 
 
 
561 aa  205  2e-51  Frankia sp. CcI3  Bacteria  normal  normal  0.165313 
 
 
-
 
NC_007925  RPC_2252  acyl-CoA dehydrogenase-like  36.19 
 
 
549 aa  205  2e-51  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.459209 
 
 
-
 
NC_011138  MADE_00944  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  31.3 
 
 
560 aa  204  3e-51  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.874747  n/a   
 
 
-
 
NC_009565  TBFG_10686  acyl-CoA dehydrogenase fadE8  36.17 
 
 
542 aa  204  3e-51  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2564  acyl-CoA dehydrogenase-like  35.77 
 
 
579 aa  204  3e-51  Polaromonas sp. JS666  Bacteria  normal  normal  0.375383 
 
 
-
 
NC_009972  Haur_3405  acyl-CoA dehydrogenase domain-containing protein  33.8 
 
 
556 aa  203  6e-51  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.873446  n/a   
 
 
-
 
NC_011004  Rpal_3525  acyl-CoA dehydrogenase domain protein  34.85 
 
 
549 aa  203  8e-51  Rhodopseudomonas palustris TIE-1  Bacteria  hitchhiker  0.00283782  n/a   
 
 
-
 
NC_010002  Daci_0120  acyl-CoA dehydrogenase domain-containing protein  34.09 
 
 
564 aa  203  9.999999999999999e-51  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2827  acyl-CoA dehydrogenase-like protein  36.14 
 
 
550 aa  202  9.999999999999999e-51  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.952078  n/a   
 
 
-
 
NC_007778  RPB_2427  Acyl-CoA dehydrogenase-like  34.61 
 
 
549 aa  201  3e-50  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0516258 
 
 
-
 
NC_012560  Avin_09290  acyl-CoA dehydrogenase  34.97 
 
 
571 aa  201  3e-50  Azotobacter vinelandii DJ  Bacteria  normal  0.142361  n/a   
 
 
-
 
NC_014158  Tpau_1017  acyl-CoA dehydrogenase domain protein  36.01 
 
 
549 aa  200  6e-50  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2353  acyl-CoA dehydrogenase domain-containing protein  35.24 
 
 
557 aa  200  6e-50  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0640  acyl-CoA dehydrogenase domain-containing protein  32.68 
 
 
559 aa  200  7.999999999999999e-50  Pseudomonas putida W619  Bacteria  normal  0.749852  normal 
 
 
-
 
NC_007492  Pfl01_4943  Acyl-CoA dehydrogenase-like  32 
 
 
549 aa  199  9e-50  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3297  Acyl-CoA dehydrogenase  35.67 
 
 
550 aa  199  1.0000000000000001e-49  Burkholderia sp. 383  Bacteria  normal  0.165535  normal 
 
 
-
 
NC_007005  Psyr_4338  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  32.47 
 
 
549 aa  199  2.0000000000000003e-49  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3025  acyl-CoA dehydrogenase-like  32.96 
 
 
551 aa  198  2.0000000000000003e-49  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.285589  normal  0.509442 
 
 
-
 
NC_008686  Pden_0948  acyl-CoA dehydrogenase domain-containing protein  34.62 
 
 
542 aa  199  2.0000000000000003e-49  Paracoccus denitrificans PD1222  Bacteria  normal  0.165431  normal 
 
 
-
 
NC_008726  Mvan_1269  acyl-CoA dehydrogenase domain-containing protein  36.04 
 
 
551 aa  198  2.0000000000000003e-49  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.934265 
 
 
-
 
NC_007651  BTH_I0193  acyl-CoA dehydrogenase domain-containing protein  34.95 
 
 
559 aa  198  3e-49  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_3316  acyl-CoA dehydrogenase domain protein  32.91 
 
 
553 aa  197  3e-49  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_5281  acyl-CoA dehydrogenase domain protein  33.53 
 
 
550 aa  197  3e-49  Conexibacter woesei DSM 14684  Bacteria  normal  0.656776  normal 
 
 
-
 
NC_012850  Rleg_1392  acyl-CoA dehydrogenase domain protein  31.92 
 
 
552 aa  197  4.0000000000000005e-49  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00476541  normal  0.125996 
 
 
-
 
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