15 homologs were found in PanDaTox collection
for query gene PputGB1_1764 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010322  PputGB1_1764  hypothetical protein  100 
 
 
74 aa  153  9e-37  Pseudomonas putida GB-1  Bacteria  normal  normal  0.199542 
 
 
-
 
NC_002947  PP_2170  chorismate mutase family protein  88.89 
 
 
232 aa  67  0.00000000007  Pseudomonas putida KT2440  Bacteria  normal  0.23691  normal 
 
 
-
 
NC_012560  Avin_32680  hypothetical protein  74.29 
 
 
36 aa  50.1  0.00001  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2363  phage integrase family site specific recombinase  48.98 
 
 
368 aa  48.9  0.00002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1711  integrase family protein  52.27 
 
 
380 aa  48.1  0.00004  Pseudomonas putida GB-1  Bacteria  normal  0.213299  hitchhiker  0.00000987295 
 
 
-
 
NC_012856  Rpic12D_1234  putative integrase/recombinase  45.45 
 
 
103 aa  45.1  0.0004  Ralstonia pickettii 12D  Bacteria  normal  0.493457  normal  0.825212 
 
 
-
 
NC_009636  Smed_1622  phage integrase family protein  46.94 
 
 
361 aa  43.5  0.001  Sinorhizobium medicae WSM419  Bacteria  normal  0.487409  normal  0.202066 
 
 
-
 
NC_009997  Sbal195_0805  phage integrase family protein  44.68 
 
 
354 aa  43.1  0.001  Shewanella baltica OS195  Bacteria  normal  normal  0.431807 
 
 
-
 
NC_010682  Rpic_1173  putative integrase/recombinase  43.18 
 
 
103 aa  43.1  0.001  Ralstonia pickettii 12J  Bacteria  normal  0.246477  normal  0.310275 
 
 
-
 
NC_009052  Sbal_3586  phage integrase family protein  46.67 
 
 
355 aa  42.7  0.002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0773  phage integrase family protein  46.67 
 
 
354 aa  42.7  0.002  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0798  integrase family protein  46.67 
 
 
354 aa  42.7  0.002  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00000196141 
 
 
-
 
NC_007954  Sden_3233  phage integrase  42.55 
 
 
356 aa  41.6  0.003  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3455  putative integrase/recombinase  40.91 
 
 
362 aa  40.8  0.006  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.375642  normal  0.439237 
 
 
-
 
NC_003910  CPS_0354  phage integrase family site specific recombinase  45 
 
 
355 aa  40.4  0.008  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
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