16 homologs were found in PanDaTox collection
for query gene Franean1_3247 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_3247  hypothetical protein  100 
 
 
435 aa  875    Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3189  hypothetical protein  59.35 
 
 
435 aa  469  1.0000000000000001e-131  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3151  hypothetical protein  54.4 
 
 
433 aa  460  9.999999999999999e-129  Frankia sp. EAN1pec  Bacteria  normal  0.134749  normal 
 
 
-
 
NC_009921  Franean1_4659  glycoside hydrolase family protein  55.26 
 
 
655 aa  128  2.0000000000000002e-28  Frankia sp. EAN1pec  Bacteria  normal  0.398765  normal  0.788478 
 
 
-
 
NC_007778  RPB_4103  extracellular ligand-binding receptor  32.08 
 
 
401 aa  47.4  0.0005  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.742112  normal  0.0857946 
 
 
-
 
NC_009379  Pnuc_0355  extracellular ligand-binding receptor  25.3 
 
 
394 aa  47.4  0.0005  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4659  extracellular ligand-binding receptor  29.69 
 
 
378 aa  46.6  0.0008  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00580673 
 
 
-
 
NC_002947  PP_4867  extracellular ligand-binding receptor  29.17 
 
 
378 aa  45.4  0.002  Pseudomonas putida KT2440  Bacteria  normal  0.0924005  hitchhiker  0.00865323 
 
 
-
 
NC_009512  Pput_4745  extracellular ligand-binding receptor  29.17 
 
 
378 aa  45.4  0.002  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.00000119526 
 
 
-
 
NC_009921  Franean1_1952  hypothetical protein  27.33 
 
 
442 aa  45.8  0.002  Frankia sp. EAN1pec  Bacteria  normal  0.780394  normal  0.542159 
 
 
-
 
NC_010322  PputGB1_4923  extracellular ligand-binding receptor  29.17 
 
 
378 aa  45.4  0.002  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000000000164326 
 
 
-
 
NC_007777  Francci3_3442  ABC-type branched-chain amino acid transport systems periplasmic component-like  28.57 
 
 
425 aa  44.3  0.004  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5294  putative ABC-type branched-chain amino acid transporter, periplasmic binding protein  34.07 
 
 
406 aa  44.3  0.005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1404  Extracellular ligand-binding receptor  33.91 
 
 
383 aa  43.9  0.006  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.11568  n/a   
 
 
-
 
NC_007778  RPB_4684  extracellular ligand-binding receptor  35.16 
 
 
406 aa  43.5  0.007  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4394  extracellular ligand-binding receptor  32.97 
 
 
406 aa  43.1  0.01  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
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