| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4394 |
|---|
| Symbol | |
|---|
| ID | 4024919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 4860342 |
|---|
| End bp | 4861562 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637964603 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_571511 |
|---|
| Protein GI | 91978852 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATCC GCATCACACT GCTTGCCGCA GGCGCTGTTG CGCTCGCCGC GGCCCAACCC
GCCTTCGCCC AGAAGCAATA CGGCCCCGGC GTCACCGACA CCGAGATCAA GATCGGTCAG
ACGATGCCCT ATAGCGGCCC GGCTTCGGCG TATGGCGTGC AGGGCCACAT CGAGGACGCC
TACTTCGCGA TGGTCAACGC CAAAGGCGGC GTCAACGGCC GCAAGATCAA GCTGATCAGC
CTCGACGACG CCTACTCGCC GCCCAAGACA GTGGAGCAGA CGCGCCGTCT GGTCGAGCAG
GACGAGGTGC TGGCGATCGT CGGCACGATC GGCACGCCGA CGAATTCCGC GATCCAGAAA
TATCTCAACG GCAAGAAAGT GCCGCACATC TTCCTCTCCA CCGGGGCTGC GAAGTGGGAC
GATCCGAAGA ACTTCCCATG GACCACGCAG CTCTATCCGC CCTACCAGAT GGAGGGCATG
ATCTTCGCGA AGTATCTGCT GAAGAACAAG CCCGACGCCA AGCTCGGCGT GTTCTCGCAG
AACGATGACG CCGGCAAGGA CTACGTCAAG GGCCTGAAGG ACGGCCTCGG CGACAAGGCC
AAGACGATGA TCGTCAAGGA GGTCACCTAC GAGGTCACCG ATCCGACCGT CGACTCGCAG
ATCGTCGCGC TGAAGGCCTC GGGCGCCGAT ACGCTGTTCA CGATGGCGAC TCCGAAATTC
GGCGCGCAGG CGATCCGCAA GGTCCATGAA CTCGGCTGGA AGCCGCTGAA CTTCGTCGTC
AGCGTCTCCA GCTCGATCAA GGGCGCGTTG CAACCCGCCG GCATCGAGGC TTCGACCGGC
CTGCTGACCG CGCTGGCGGC GAAGACGCCG ACCGACCCGC GCTTCGAGAA CGACGCCGAC
GTCAAGGAGC TGAAGGATTT CCTGGCAAAG TGGTATCCGA AAGGCGACAT CGCCGACGGC
AGCACCGTGA CCGGCTACAT CTCCGCTTTC ATGACGGTGA AGGTGCTGGA AGCCTGCGGA
GACAATCTCA CCCGCGAAAA CCTGCTGAAG CAGGCGACCA ACATCCCGCC GACCGCCGCG
CCGCTGTTGC TGCCCGGCAT CAAGATCTCG ACACGGCCGG ATCGCTACGC GCCGTACACC
CAGATGCAGA TCGCCCGTTT CGACGGAAGA AGCTGGGTGC CGGAAGGCGA GGTGTTCAAC
ACCGACACTG CGGCGAAGTA G
|
|---|
| Protein sequence | MSIRITLLAA GAVALAAAQP AFAQKQYGPG VTDTEIKIGQ TMPYSGPASA YGVQGHIEDA
YFAMVNAKGG VNGRKIKLIS LDDAYSPPKT VEQTRRLVEQ DEVLAIVGTI GTPTNSAIQK
YLNGKKVPHI FLSTGAAKWD DPKNFPWTTQ LYPPYQMEGM IFAKYLLKNK PDAKLGVFSQ
NDDAGKDYVK GLKDGLGDKA KTMIVKEVTY EVTDPTVDSQ IVALKASGAD TLFTMATPKF
GAQAIRKVHE LGWKPLNFVV SVSSSIKGAL QPAGIEASTG LLTALAAKTP TDPRFENDAD
VKELKDFLAK WYPKGDIADG STVTGYISAF MTVKVLEACG DNLTRENLLK QATNIPPTAA
PLLLPGIKIS TRPDRYAPYT QMQIARFDGR SWVPEGEVFN TDTAAK
|
|---|
| |