9 homologs were found in PanDaTox collection
for query gene Avi_1947 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_011989  Avi_1947  transcriptional regulator protein  100 
 
 		 210 aa  422  1e-117  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009636  Smed_1025  helix-turn-helix domain-containing protein  40.16 
 
 		 130 aa  72  0.000000000006  Sinorhizobium medicae WSM419  Bacteria  hitchhiker  0.00102853  normal  1 
 
 
-
 
NC_007802  Jann_2653  XRE family transcriptional regulator  35.16 
 
 		 133 aa  62.4  0.000000004  Jannaschia sp. CCS1  Bacteria  normal  0.0271139  normal  0.0108721 
 
 
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NC_009952  Dshi_0763  transcriptional regulator  37.07 
 
 		 130 aa  58.2  0.0000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  0.305784 
 
 
-
 
NC_007493  RSP_0762  XRE family transcriptional regulator  35.9 
 
 		 132 aa  54.7  0.000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009049  Rsph17029_2421  helix-turn-helix domain-containing protein  35.9 
 
 		 132 aa  54.7  0.000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.195917  normal  0.223738 
 
 
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NC_009428  Rsph17025_0413  helix-turn-helix domain-containing protein  36.75 
 
 		 132 aa  53.9  0.000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
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NC_009800  EcHS_A0322  helix-turn-helix/peptidase S24-like domain-containing protein  29.41 
 
 		 213 aa  50.8  0.00001  Escherichia coli HS  Bacteria  normal  0.274392  n/a   
 
 
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NC_008044  TM1040_1733  XRE family transcriptional regulator  38.2 
 
 		 133 aa  49.7  0.00003  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
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