19 homologs were found in PanDaTox collection
for query gene TM1040_3793 on replicon NC_008042
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009957  Dshi_3989  relaxase/mobilization nuclease family protein  79.18 
 
 
777 aa  1173  Dinoroseobacter shibae DFL 12  Bacteria  normal  n/a   
 
 
-
 
NC_009955  Dshi_3656  relaxase/mobilization nuclease family protein  78.28 
 
 
777 aa  1162  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0486452  decreased coverage  3.02342e-07 
 
 
-
 
NC_008042  TM1040_3793  relaxase/mobilization nuclease domain-containing protein  100 
 
 
736 aa  1470  Ruegeria sp. TM1040  Bacteria  decreased coverage  0.00267002  normal 
 
 
-
 
NC_011982  Avi_8212  type IV secretion system T-DNA border endonuclease VirD2  35.29 
 
 
403 aa  101  4e-20  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009432  Rsph17025_4359  relaxase/mobilization nuclease family protein  30.99 
 
 
400 aa  57  1e-06  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.738974 
 
 
-
 
NC_007951  Bxe_A2643  putative DNA relaxase/nickase, TraS/VirD2- like  34.23 
 
 
337 aa  51.2  7e-05  Burkholderia xenovorans LB400  Bacteria  normal  0.214976  normal 
 
 
-
 
NC_009475  BBta_p0017  hypothetical protein  28.86 
 
 
344 aa  50.8  8e-05  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal  0.125294 
 
 
-
 
NC_008543  Bcen2424_3327  plasmid-related protein  27.22 
 
 
351 aa  49.3  0.0003  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.828723 
 
 
-
 
NC_008061  Bcen_4839  plasmid-related protein  27.22 
 
 
351 aa  49.3  0.0003  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.658809  n/a   
 
 
-
 
NC_009508  Swit_4977  hypothetical protein  31.82 
 
 
377 aa  48.5  0.0004  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4188  putative DNA relaxase/nickase, TraS/VirD2-like protein  27.22 
 
 
351 aa  48.9  0.0004  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.730341  normal 
 
 
-
 
NC_007953  Bxe_C0462  putative DNA relaxase/nickase, TraS/VirD2-like  27.14 
 
 
349 aa  47.8  0.0007  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0308  plasmid-related protein  26.11 
 
 
344 aa  47.8  0.0008  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.518221  n/a   
 
 
-
 
NC_008542  Bcen2424_0791  plasmid-related protein  26.11 
 
 
344 aa  47.4  0.001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.435871  n/a   
 
 
-
 
NC_010676  Bphyt_6491  putative DNA relaxase/nickase, TraS/VirD2-like protein  33.64 
 
 
337 aa  47  0.001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.440209  normal  0.634473 
 
 
-
 
NC_007951  Bxe_A1768  putative DNA relaxase/nickase, TraS/VirD2-like  26.55 
 
 
337 aa  46.2  0.002  Burkholderia xenovorans LB400  Bacteria  normal  0.330763  normal  0.546869 
 
 
-
 
NC_010508  Bcenmc03_0760  putative DNA relaxase/nickase, TraS/VirD2-like protein  25.61 
 
 
344 aa  45.1  0.005  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG0868  mobilization protein  31.4 
 
 
307 aa  45.1  0.005  Porphyromonas gingivalis W83  Bacteria  n/a    normal  0.024127 
 
 
-
 
NC_011986  Avi_9808  Ti-type conjugative transfer relaxase TraA  28.03 
 
 
920 aa  44.3  0.008  Agrobacterium vitis S4  Bacteria  n/a    n/a   
 
 
-
 
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