| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3793 |
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| Symbol | |
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| ID | 4074887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | + |
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| Start bp | 41230 |
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| End bp | 43440 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638004452 |
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| Product | relaxase/mobilization nuclease domain-containing protein |
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| Protein accession | YP_611187 |
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| Protein GI | 99077928 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.00267002 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCTGA ATGATGCGGT TGACGCTGTC ACGGGCGAGG TTTTCCGGGA CGGCTGGAGC
CGGATCCGGG GCTCGATGCA GGGGCTGCAT GTCGCCAAGC AGAGCCAGCT TGTGCGCGCG
GCAGCCGGGC ACCGGCCAGC GGTCTTCAAG GCGATCCGGG GTGGGGGCAC GCACACCAAA
TCGCAACTCG CAAACCAGCT TGATTATCTG ACCACGAAGT CCACCCATAT CGTGGACTCG
AGCGGGTTTC TGGATGGCAA GGCAAAGCTT GAGGCAAAGG ACATCAAGGA TCTGACCGAG
CGCTTTGCCA AGCGATGGGA TGCAGGTTTC AAACCCAAGC TTGGCCAGAC CACGCACATG
CTCATGTCCT TCCCGATCGG CACGCGGGGC GAGGATGTGC GCGACATCGC AACGGATGTG
GCCGAGCGGT TCTTCCAGAC CGATGAGGGG CATTTCGATT ACATCATCGC GGTGCATGAG
GACCGCGATC ACCCGCATGC GCATCTGGTA CTGAACCGCC GCTCGCAGGA AGGCGAGTTC
TTCTTTCTGG GGCGCAACCA TCGCTTCAAC TATGACGCTT TCCGCCTTGC CATGGTCGAG
GAGGCCGAAA AGTATGGCGT GCGCCTGGAG GCCACGCGTC GGGTGGATCG TGGGGTTGTG
CATTACCCCG CCCGGACCCG CGAGGTCTAT GCCGCAAAGG AAGAGGGCCG CGCACCCCGC
GAGCGGGAAC GCGTGGGGGC CGACCTGACG CGGACGCTGG CGGAGAGCGC CAATACCAGA
ACTGTCTACC ACTCGCTTGC TGCGGAGGCT TCGCGCGAGG CCCGCGAGGA TATTGCCGCA
GCCCTCTTCC GCGCGGGCGA GGTGCTGGCG CGCGGCGGGC AGGTGGACCG AACAGGAGAT
GTGTATATGG CCGAGGATCA AAGTTTTGAG GATTTGAGAA GCCTCTATGC GGAGAAGCTC
GCGCGGGTGC AGGGCATGAT TGCCGAGAAG TCCGACGCGG AACGCCCCGT GCTGGAAAAA
CGCCTCATCG AGATCCAGAC GCAGGTCCAG CATATGCAGC CGCTCGGATT ACGTTCGAGC
ACATTGTCAG AGACCCCCTC GGACGGCGGG ATCTATTCTG AGGCCAATAT CGACGCCAGC
CAGCGCGAGC GACTGGCCGA GCCCGACCTG AGAGCGCGCA TTGACGTAGC ACTACGGGGC
ACCGGGATCA GCACATCGGA AGTGGTGGCC CGGATCGAGA CAGGCGCCTC AAATGCAGCG
CTCGAGCATC AATGGATCGC TGATGATCTC TCCAAGGTGG CCGAGGCGCG CGATCTGAAC
CTCGAGCGCC GCGCCGATTT GGAACAGGCG CGCGACATTC TCAACAATGT GCATGTCGCG
CTTGGCACGC TCTTGGAACG GGAGGCGGTG CTGCGCCACG ATGGCGTGAT TGATGAGGCC
CGCGCGGCGC GGGTCCATCT CACCAAAGAC AGAATTGAAG AGGCTGCCAA GGTTGTGCGG
TTGGAGACGT CCATTAGCGA GCGGGGTGAG GCCTTAATCG AAACCCGCGC CGTGGAGCGC
CTCGAGGCCG AGCAGCGCGC CTACCTGCAG GAGCATCCGG ACCTTCTTCA GAGCCCGGCC
GATGTCATCC GTATGGATGA GGAAGGCCGC GCCAGGATTG TCGATCAGAA GCTGGCTGAC
CTCATTGGTC GTGAGATTGA GGCTGCGCGT CTTGGTGCTC ATAGCCGCAC ACCGATCTCT
GTGGCCGTCA CGCGGGACTT GCAGGCGCGT TATCCGGATA TGCCAGGGCA GCTGGCCGAA
GGTCTCGGAG AGACCTATGC CCATGTTCAG GACGCCCGCC TGTCCCAGCG GGAGGTGCAG
GTTCTCCAGA TGCCGGAACT GGACCGTGTG CTGACTCATG AGCGGGCGGG GGAGTTGTCC
GCGCCCTTCG AGACCGAAGA CGAGAGGGAC GCTTTCCGAA CCGAGATCGC GCGGGTGCTG
GATGACCGCC AGTTGGGCCG CCTCACATCC GGCGATGCCG ATGCGCTGGA ACAGGTTCTC
GGGGACCGCC TCGACCGGCT CTATGTCGCC AAGGTCTATC TGCAATCCGA TGCCGCCACG
GTCAACACGG AGGCCTTGCG CCAGGTGGTC GATGAACTCG CCGACGCCGA ATACGAAAAA
CACCGCGCGA CAGACGTGGA TGGTGAGACC GAACGGGGGC AGATCCATTG A
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| Protein sequence | MRLNDAVDAV TGEVFRDGWS RIRGSMQGLH VAKQSQLVRA AAGHRPAVFK AIRGGGTHTK
SQLANQLDYL TTKSTHIVDS SGFLDGKAKL EAKDIKDLTE RFAKRWDAGF KPKLGQTTHM
LMSFPIGTRG EDVRDIATDV AERFFQTDEG HFDYIIAVHE DRDHPHAHLV LNRRSQEGEF
FFLGRNHRFN YDAFRLAMVE EAEKYGVRLE ATRRVDRGVV HYPARTREVY AAKEEGRAPR
ERERVGADLT RTLAESANTR TVYHSLAAEA SREAREDIAA ALFRAGEVLA RGGQVDRTGD
VYMAEDQSFE DLRSLYAEKL ARVQGMIAEK SDAERPVLEK RLIEIQTQVQ HMQPLGLRSS
TLSETPSDGG IYSEANIDAS QRERLAEPDL RARIDVALRG TGISTSEVVA RIETGASNAA
LEHQWIADDL SKVAEARDLN LERRADLEQA RDILNNVHVA LGTLLEREAV LRHDGVIDEA
RAARVHLTKD RIEEAAKVVR LETSISERGE ALIETRAVER LEAEQRAYLQ EHPDLLQSPA
DVIRMDEEGR ARIVDQKLAD LIGREIEAAR LGAHSRTPIS VAVTRDLQAR YPDMPGQLAE
GLGETYAHVQ DARLSQREVQ VLQMPELDRV LTHERAGELS APFETEDERD AFRTEIARVL
DDRQLGRLTS GDADALEQVL GDRLDRLYVA KVYLQSDAAT VNTEALRQVV DELADAEYEK
HRATDVDGET ERGQIH
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