28 homologs were found in PanDaTox collection
for query gene Avi_8212 on replicon NC_011982
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011982  Avi_8212  type IV secretion system T-DNA border endonuclease VirD2  100 
 
 
403 aa  820    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008042  TM1040_3793  relaxase/mobilization nuclease domain-containing protein  35.29 
 
 
736 aa  101  2e-20  Ruegeria sp. TM1040  Bacteria  decreased coverage  0.00267002  normal 
 
 
-
 
NC_009957  Dshi_3989  relaxase/mobilization nuclease family protein  34.22 
 
 
777 aa  98.2  2e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  n/a   
 
 
-
 
NC_009955  Dshi_3656  relaxase/mobilization nuclease family protein  34.22 
 
 
777 aa  98.2  2e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0486452  decreased coverage  0.000000302342 
 
 
-
 
NC_009475  BBta_p0017  hypothetical protein  31.87 
 
 
344 aa  75.9  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal  0.125294 
 
 
-
 
NC_010515  Bcenmc03_4188  putative DNA relaxase/nickase, TraS/VirD2-like protein  32.14 
 
 
351 aa  66.6  0.0000000008  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.730341  normal 
 
 
-
 
NC_008061  Bcen_4839  plasmid-related protein  32.14 
 
 
351 aa  66.2  0.0000000008  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.658809  n/a   
 
 
-
 
NC_008543  Bcen2424_3327  plasmid-related protein  32.14 
 
 
351 aa  66.2  0.0000000008  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.828723 
 
 
-
 
NC_007951  Bxe_A2643  putative DNA relaxase/nickase, TraS/VirD2- like  29.95 
 
 
337 aa  65.5  0.000000002  Burkholderia xenovorans LB400  Bacteria  normal  0.214976  normal 
 
 
-
 
NC_009508  Swit_4977  hypothetical protein  26.83 
 
 
377 aa  63.2  0.000000009  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0462  putative DNA relaxase/nickase, TraS/VirD2-like  29.79 
 
 
349 aa  63.2  0.000000009  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1768  putative DNA relaxase/nickase, TraS/VirD2-like  29.41 
 
 
337 aa  61.2  0.00000003  Burkholderia xenovorans LB400  Bacteria  normal  0.330763  normal  0.546869 
 
 
-
 
NC_008771  Veis_5017  relaxase/mobilization nuclease family protein  29.71 
 
 
377 aa  60.5  0.00000005  Verminephrobacter eiseniae EF01-2  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6491  putative DNA relaxase/nickase, TraS/VirD2-like protein  29.95 
 
 
337 aa  60.1  0.00000006  Burkholderia phytofirmans PsJN  Bacteria  normal  0.440209  normal  0.634473 
 
 
-
 
NC_012791  Vapar_2249  Relaxase/mobilization nuclease family protein  30.28 
 
 
368 aa  59.3  0.0000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4526  hypothetical protein  27.05 
 
 
368 aa  58.5  0.0000002  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009508  Swit_4934  relaxase/mobilization nuclease family protein  24.73 
 
 
368 aa  58.2  0.0000003  Sphingomonas wittichii RW1  Bacteria  normal  0.421912  normal  0.821482 
 
 
-
 
NC_009432  Rsph17025_4359  relaxase/mobilization nuclease family protein  27.91 
 
 
400 aa  57  0.0000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.738974 
 
 
-
 
NC_010508  Bcenmc03_0760  putative DNA relaxase/nickase, TraS/VirD2-like protein  29.93 
 
 
344 aa  56.6  0.0000008  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_0791  plasmid-related protein  29.93 
 
 
344 aa  56.2  0.000001  Burkholderia cenocepacia HI2424  Bacteria  normal  0.435871  n/a   
 
 
-
 
NC_008060  Bcen_0308  plasmid-related protein  29.93 
 
 
344 aa  56.2  0.000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.518221  n/a   
 
 
-
 
NC_012792  Vapar_5826  hypothetical protein  26.96 
 
 
363 aa  54.7  0.000003  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_0150  Cpp17  25.87 
 
 
416 aa  53.5  0.000007  Campylobacter hominis ATCC BAA-381  Bacteria  decreased coverage  0.0000847879  n/a   
 
 
-
 
NC_010509  Mrad2831_6340  putative DNA relaxase/nickase, TraS/VirD2-like protein  27.43 
 
 
367 aa  50.4  0.00005  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal  0.271931 
 
 
-
 
NC_010524  Lcho_0785  putative DNA relaxase/nickase, TraS/VirD2-like protein  27.41 
 
 
321 aa  48.9  0.0002  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00514005 
 
 
-
 
NC_012040  Cla_a001  nickase/relaxase  24.83 
 
 
438 aa  48.9  0.0002  Campylobacter lari RM2100  Bacteria  normal  0.0555425  n/a   
 
 
-
 
NC_010681  Bphyt_0176  Relaxase/mobilization nuclease family protein  29.41 
 
 
349 aa  47.4  0.0005  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0486311 
 
 
-
 
NC_008790  CJJ81176_pTet0012  cpp17  25.17 
 
 
462 aa  44.7  0.003  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.000347998  n/a   
 
 
-
 
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