27 homologs were found in PanDaTox collection
for query gene EcDH1_2229 on replicon CP001637
Organism: Escherichia coli DH1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_01371  glyceraldehyde-3-phosphate dehydrogenase  99.1 
 
 
1002 bp  1907  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1499  glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  99.7 
 
 
1002 bp  1955  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2242  glyceraldehyde-3-phosphate dehydrogenase, type I  99.7 
 
 
1002 bp  1955  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1756  glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  97.11 
 
 
1002 bp  1748  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  5.57721e-13 
 
 
-
 
NC_010658  SbBS512_E1636  glyceraldehyde-3-phosphate dehydrogenase, type I  99.08 
 
 
654 bp  1241  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_2022  glyceraldehyde-3-phosphate dehydrogenase  98.3 
 
 
1002 bp  1844  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  5.72719e-06 
 
 
-
 
NC_009801  EcE24377A_1597  glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)  98.9 
 
 
1002 bp  1891  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2229    100 
 
 
1001 bp  1984  Escherichia coli DH1  Bacteria  decreased coverage  0.00186252  n/a   
 
 
-
 
NC_012892  B21_01383  hypothetical protein  99.1 
 
 
1002 bp  1907  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1955  glyceraldehyde-3-phosphate dehydrogenase, type I  78.28 
 
 
1002 bp  161  5e-37  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E1638  hypothetical protein  97.5 
 
 
114 bp  143  1e-31  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0245  glyceraldehyde-3-phosphate dehydrogenase, type I  97.22 
 
 
1002 bp  63.9  8e-08  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  7.92128e-08  n/a   
 
 
-
 
NC_004116  SAG1768  glyceraldehyde-3-phosphate dehydrogenase  97.22 
 
 
1011 bp  63.9  8e-08  Streptococcus agalactiae 2603V/R  Bacteria  unclonable  5.33511e-05  n/a   
 
 
-
 
NC_008527  LACR_2555  glyceraldehyde 3-phosphate dehydrogenase  97.22 
 
 
1011 bp  63.9  8e-08  Lactococcus lactis subsp. cremoris SK11  Bacteria  hitchhiker  0.00648183  n/a   
 
 
-
 
NC_008527  LACR_0580  glyceraldehyde 3-phosphate dehydrogenase  100 
 
 
1014 bp  60  1e-06  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.179566  n/a   
 
 
-
 
NC_008532  STER_1761  glyceraldehyde-3-phosphate dehydrogenase  94.44 
 
 
1011 bp  56  2e-05  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.00153635  n/a   
 
 
-
 
NC_009783  VIBHAR_03049  glyceraldehyde 3-phosphate dehydrogenase  94.29 
 
 
996 bp  54  8e-05  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002908  NAD-dependent glyceraldehyde-3-phosphate dehydrogenase  94.29 
 
 
996 bp  54  8e-05  Vibrio sp. Ex25  Bacteria  hitchhiker  1.40717e-05  n/a   
 
 
-
 
NC_009457  VC0395_A1586  glyceraldehyde 3-phosphate dehydrogenase  94.29 
 
 
996 bp  54  8e-05  Vibrio cholerae O395  Bacteria  unclonable  4.76485e-14  n/a   
 
 
-
 
NC_011312  VSAL_I2818  glyceraldehyde-3-phosphate dehydrogenase  96.67 
 
 
1002 bp  52  0.0003  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2367  glyceraldehyde-3-phosphate dehydrogenase, type I  93.94 
 
 
993 bp  50.1  0.001  Psychromonas ingrahamii 37  Bacteria  normal  0.104929  normal  0.468726 
 
 
-
 
NC_013132  Cpin_1397  glyceraldehyde-3-phosphate dehydrogenase, type I  91.89 
 
 
1017 bp  50.1  0.001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0137  glyceraldehyde-3-phosphate dehydrogenase  90 
 
 
1011 bp  48.1  0.005  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.289587  n/a   
 
 
-
 
NC_011094  SeSA_A2179  glyceraldehyde-3-phosphate dehydrogenase, type I  91.67 
 
 
996 bp  48.1  0.005  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.126502  normal 
 
 
-
 
NC_009783  VIBHAR_00296  glyceraldehyde-3-phosphate dehydrogenase  91.67 
 
 
1002 bp  48.1  0.005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008309  HS_1466  glyceraldehyde-3-phosphate dehydrogenase  91.67 
 
 
1005 bp  48.1  0.005  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B2131  glyceraldehyde-3-phosphate dehydrogenase, type I  91.67 
 
 
996 bp  48.1  0.005  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.525538  n/a   
 
 
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