| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1586 |
|---|
| Symbol | gapA-1 |
|---|
| ID | 5137413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 1705358 |
|---|
| End bp | 1706353 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640533043 |
|---|
| Product | glyceraldehyde 3-phosphate dehydrogenase |
|---|
| Protein accession | YP_001217527 |
|---|
| Protein GI | 147675025 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000000000476485 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTATCA AAGTAGGTAT TAACGGTTTT GGCCGTATCG GTCGTTTCGT TTTCCGTGCT
GCGCAAGAGC GCAATGACAT CGAAATTGTA GGTATCAACG ACCTGATCGA CGTTGATTAC
ATGGCATACA TGCTGAAGTA CGACTCAACT CACGGTCGTT TCAACGGCAC TGTTGAAGTG
AAAGACGGTA ACCTGATCGT TAACGGCAAA ACTGTACGTG TAACTGCAGA ACGTAACCCA
GCTGACCTGA AATGGGGCGA AATCGGTGTT GACGTTGTTG CTGAAGCAAC AGGTCTGTTC
CTAACTGACG AAACTGCTCG TAAACACATC GAAGCAGGCG CGAAGAAAGT TGTTCTGACT
GGTCCTTCAA AAGACAAGAC TCCAATGTTC GTAATGGGTG TTAACCACAA GACTTACGCG
GGTCAAGACA TCGTTTCTAA CGCTTCTTGT ACAACTAACT GTCTAGCGCC TATCGCTAAA
GTACTGAACG ACAACTTCGG TATCGAGTCT GGCCTGATGA CCACTGTTCA CGCGACAACT
GCAACTCAAA AAACAGTTGA CGGTCCTTCA GCAAAAGACT GGCGCGGTGG CCGTGGTGCT
TCTCAAAACA TCATCCCATC TTCAACTGGC GCAGCGAAAG CAGTAGGCGT TGTTCTTCCA
GAACTGAACG GCAAACTGAC TGGTATGGCT TTCCGCGTAC CAACTGCTAA CGTTTCTGTA
GTTGACCTGA CTGTTAACCT GCAAAAAGCA GCGTCTTACG ACGACATCAA AGCAGCTATG
AAAGCAGCTT CTGAAGGCGA ACTGGCTGGT ATCCTAGGCT ACACTGAAGA TGCCGTAGTT
TCTACTGACT TCAACGGTGA CACTCGCACT TCTATCTTCG ATGCTGACGC AGGTATCGCA
CTGACTGACA AATTCGTTAA AGTAGTATCT TGGTACGACA ACGAAATCGG TTACTCAAAC
AAAGTTCTTG ACCTGATCGC TCACATCTCT AAGTAA
|
|---|
| Protein sequence | MTIKVGINGF GRIGRFVFRA AQERNDIEIV GINDLIDVDY MAYMLKYDST HGRFNGTVEV
KDGNLIVNGK TVRVTAERNP ADLKWGEIGV DVVAEATGLF LTDETARKHI EAGAKKVVLT
GPSKDKTPMF VMGVNHKTYA GQDIVSNASC TTNCLAPIAK VLNDNFGIES GLMTTVHATT
ATQKTVDGPS AKDWRGGRGA SQNIIPSSTG AAKAVGVVLP ELNGKLTGMA FRVPTANVSV
VDLTVNLQKA ASYDDIKAAM KAASEGELAG ILGYTEDAVV STDFNGDTRT SIFDADAGIA
LTDKFVKVVS WYDNEIGYSN KVLDLIAHIS K
|
|---|
| |